| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4907 |
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| Symbol | rpsC |
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| ID | 7971601 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5218754 |
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| End bp | 5219680 |
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| Gene Length | 927 bp |
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| Protein Length | 308 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644795502 |
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| Product | 30S ribosomal protein S3 |
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| Protein accession | YP_002946777 |
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| Protein GI | 239817867 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0092] Ribosomal protein S3 |
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| TIGRFAM ID | [TIGR01009] ribosomal protein S3, bacterial type |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.0459562 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGACAGA AAATCCATCC GACCGGCTTC CGCCTTGCGG TTACCCGTAA CTGGTCCAGC
CGCTGGTACG CAAGCGACCG CGATTTCGCG GGCATGCTGG CCGAAGACAT CAAGGTCCGC
GAATACCTCA AGAAGAAGCT GAAGAACGCT TCGGTGTCGC GCGTCATGAT CGAGCGTCCC
GCCAAGAACG CACGCATCAC GATCTACTCG GCTCGTCCGG GCGTCGTGAT CGGCAAGAAG
GGCGAAGACA TCGAGAACCT CAAGCGCGAA CTGGGCAAGC AGCTCGGCGT GCCGGTGGCA
GTCAACATCG AAGAAGTGCG CAAGCCCGAA ATCGATGCCC AGCTGATCGC CGACAGCATC
ACGCAGCAGC TCGAAAAGCG GATCATGTTC CGCCGCGCCA TGAAGCGCGC CATGCAGAAC
GCCATGCGTC TGGGTGCCCA GGGCATCAAG ATCATGTCGG CTGGCCGCCT GAACGGCATC
GAAATTGCCC GTACCGAGTG GTACCGCGAA GGCCGCGTGC CCCTCCATAC GCTGCGCGCC
GACATCGACT ACGGCACCTC GGAAGCCAAG ACCACCTACG GCGTCATCGG CGTCAAGGTC
TGGGTCTACA AGGGCGACAC GCTGGGCCGC AACGACCTGC CGGCCGTCGA AACGCCGCGT
CCGGACGACG AGCGTCGCCC GCGTGGTCCG CGCCGCGATG GCCGCCCGGG TGGCGACCGT
CCGGGTTCGG ACCGTCGTGG CCCCGGCCCG CGCGCCGGTG CCCGTGGCCC GATCGGTGGC
AACACCGCCC CGGCCGACGG CAGCGATAAG CCCGCAGAAG CCACTGGCGC AGCTCCCGCT
GCTCCGGGTG CAGACTCGAA ACCCGCCGTT AAGCGCGTCC GCAAAGCCGC GCCAGCTGCA
GCAGCTGACG GTGCCAAGAC CGAGTGA
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| Protein sequence | MGQKIHPTGF RLAVTRNWSS RWYASDRDFA GMLAEDIKVR EYLKKKLKNA SVSRVMIERP
AKNARITIYS ARPGVVIGKK GEDIENLKRE LGKQLGVPVA VNIEEVRKPE IDAQLIADSI
TQQLEKRIMF RRAMKRAMQN AMRLGAQGIK IMSAGRLNGI EIARTEWYRE GRVPLHTLRA
DIDYGTSEAK TTYGVIGVKV WVYKGDTLGR NDLPAVETPR PDDERRPRGP RRDGRPGGDR
PGSDRRGPGP RAGARGPIGG NTAPADGSDK PAEATGAAPA APGADSKPAV KRVRKAAPAA
AADGAKTE
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