| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4882 |
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| Symbol | |
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| ID | 7971576 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5198791 |
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| End bp | 5200359 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795477 |
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| Product | major facilitator superfamily MFS_1 |
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| Protein accession | YP_002946752 |
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| Protein GI | 239817842 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCCTCTT CCCCCCGCCA TCCCTCTCTC GCGCTGGCCG CCATCTGCCT GGCGGCGCTG
ATGTTCGGCC TGGAGATTTC CAGCGTGCCG ATCATCCTGC CGGTGCTCGA AGCGCGGCTG
CACGCCGGCT TCCGCGACCT GCAATGGATC ATGAACGCCT ACACCATCGC CTGCACCACG
GTGCTGATGG CCACCGGCAC CCTGGCCGAC CGCTACGGAC GGCGCCGCAT GTTCGCGCTC
ACGGTGCTGG CCTTCGGCCT GGCCTCGCTG CTGTGCGGCC TGGCGCCCAG CACGCCGGCG
CTGATTGCCG CGCGCTTCCT GCAGGGCATG GCGGGCGGCG CGATGTTCAT CTGCTCGATT
GCGATCCTGT CGCACCAGTT TCCGGACGGC CGGGCGCGCG GCCGCGCCTT CGCGATCTGG
GGCGTGGTGG CCGGCATCGG CCTGGGGTTC GGGCCGGTGG TGGGCGGCGC GATCATTGCG
CTGGCCAGCT GGCACTGGGT CTTCCTTGCG CACGTGCCGC TGGCGCTGCT GGGGCTGGCG
CTGATCATGG CCGGCGTGGC GGAGTCGCGC GATCCGCTGG CCCGCCAGCA GAAGCTGGAC
CTGGCGGGCA TCGTCACGCT GACCACCGCG GTGCTCGGGC TCACCTGGCT GATCACGCAG
GGCGACAGCC TGGGCTGGAG CAGCCCGGCC GCGCTGGGCC TGATGGCCGC CACCGCGGCG
GGGCTCGCGG CCTTCGTCGC GGTCGAGCGC TTCCATCCGC ACCCGATGTT CGACTTCTCG
GTGTTCCGCA TCCGCGACTT CTCGGGCGCC ATCCTCGGCT GCATCGGCAT GAACTGCAGC
TACTGGCCGT TCATGATCTA CCTGCCGCTG TATTTCTCCG CCGGCCTGGG CTACGGCACG
ACCGCCGCCG GCCTGGCGCT GCTGGTCTAC ACGGTGCCCT TCCTCGTGAT GCCGCCGATC
GCGCAGTGGC TGCTGCTGCG CTACCAGGCG CGCTTCGTGA TTCCCGCAGG CCTGTTCCTG
ATCGGCCTGG GCTTCATCGC GATGAAGTGG GGCAGCGGCC TCGCGCAGCT GGGCGGCTGG
ACGGTGCTGC CCGGTGCGCT GGTCGCCGGC ATCGGCCTGG GCCTGACCAC CACGCCCGCG
ACCAACATGA CCACCGCCTC GGTGCCCGCG CACCGCGCCG GCATGGCCTC GGGCATGGAC
GTCAGCGCGC GCCTCATCTC GCTGGCCATC AACATCGCGG TGATGGGCCT GGTGCTGGTG
GCGGGCATCC TGGCCGCGCT GCGGGGCTCG CTGGGGACGG CGCTCGATGC GGCGCGGCTG
CGCGCATTGG CCGAGCAGCT CGCGGGCGGG GACGTGGCGG GGGCGCAGCA GGCGCTGGCG
GCCACGCTGG CGGTGCCGGA TGCTTCCGGT GCGCTCCTGC AGGCCGCCGT GACCCACGGC
TTCGGATGGG TCATGCTGTA CGGCGCGCTC GGCGCCTGGT TGACCGCGGC GCTCAGCTTC
GCGGTGTTCG GCGGCCGGCA GGCTGCGTCC GTGCGGGACG CGTCACCGGG GATGGCCGGC
GGGCGATAA
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| Protein sequence | MSSSPRHPSL ALAAICLAAL MFGLEISSVP IILPVLEARL HAGFRDLQWI MNAYTIACTT
VLMATGTLAD RYGRRRMFAL TVLAFGLASL LCGLAPSTPA LIAARFLQGM AGGAMFICSI
AILSHQFPDG RARGRAFAIW GVVAGIGLGF GPVVGGAIIA LASWHWVFLA HVPLALLGLA
LIMAGVAESR DPLARQQKLD LAGIVTLTTA VLGLTWLITQ GDSLGWSSPA ALGLMAATAA
GLAAFVAVER FHPHPMFDFS VFRIRDFSGA ILGCIGMNCS YWPFMIYLPL YFSAGLGYGT
TAAGLALLVY TVPFLVMPPI AQWLLLRYQA RFVIPAGLFL IGLGFIAMKW GSGLAQLGGW
TVLPGALVAG IGLGLTTTPA TNMTTASVPA HRAGMASGMD VSARLISLAI NIAVMGLVLV
AGILAALRGS LGTALDAARL RALAEQLAGG DVAGAQQALA ATLAVPDASG ALLQAAVTHG
FGWVMLYGAL GAWLTAALSF AVFGGRQAAS VRDASPGMAG GR
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