| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4881 |
|---|
| Symbol | |
|---|
| ID | 7971575 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5197787 |
|---|
| End bp | 5198770 |
|---|
| Gene Length | 984 bp |
|---|
| Protein Length | 327 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 644795476 |
|---|
| Product | lipoyl synthase |
|---|
| Protein accession | YP_002946751 |
|---|
| Protein GI | 239817841 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0320] Lipoate synthase |
|---|
| TIGRFAM ID | [TIGR00510] lipoate synthase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 21 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAGCACCA CAGAAGTCGT CCGCGACGCG CAAAGCGCCG AAAACTACAA CCCGCTCGCC
AAGCAGAAGG CCGCGGCCAA GCTCTCGCGC ATTCCCGTCA AGGTGGTGCA GCAGGGCGAG
GTGCTCAAGA AGCCCGAATG GATCCGCGTG AAGGCCGGCA GCCCCACCAC GCGCTTCTAC
GAGATCAAGC AGATCCTGCG CGAGAGCAAC CTGCACACGG TCTGCGAGGA AGCCTCGTGC
CCGAACATCG GCGAATGCTT CGGCAACGGC ACGGCCACCT TCATGATCAT GGGCGACAAG
TGCACGCGCC GCTGCCCGTT CTGCGACGTG GGCCACGGCC GCCCCGACCC GCTCGACAAG
GACGAGCCGC TCAACCTCGC CAAGACCATC GCCAAGCTGC GCCTGAAGTA CGTGGTGATC
ACCAGCGTCG ACCGCGACGA CCTGCGCGAC GGCGGCAGCC AGCATTTCGT CGACTGCATC
ACGAACATCC GCGAGCTCTC GCCGATGACG CAGATCGAGA TCCTGGTGCC CGACTTCCGC
GGCCGCGACG ACCGCGCGCT CGAGATCCTC AAGGCCGCGC CGCCGGACGT GATGAACCAC
AACCTCGAAA CCGCGCCGCG CCTCTACAAG GAAGCGCGCC CCGGCAGCGA CTACCAGTTC
AGCCTCAACC TGCTGAAGAA GTTCAAGGCG CTGCATCCGC AGGTGCCGAC CAAGAGCGGC
ATCATGGTGG GCCTGGGCGA AACCGACGAA GAGATCCTGC AGGTGATGCG CGACATGCGC
GCCCACGACA TCGACATGCT GACCATCGGC CAGTACCTGT CGCCGTCGGG CTCGCACCTG
CCGGTGCGCC GCTACGTGCA CCCCGACACC TTCAAGATGT TCGAGGAAGA GGCCTACAAG
ATGGGCTTCA GCCACGCGGC CGTGGGCGCG ATGGTGCGTT CGAGCTACCA CGCGGACCAG
CAGGCGCACG CCGCGGGCGT CTGA
|
|---|
| Protein sequence | MSTTEVVRDA QSAENYNPLA KQKAAAKLSR IPVKVVQQGE VLKKPEWIRV KAGSPTTRFY
EIKQILRESN LHTVCEEASC PNIGECFGNG TATFMIMGDK CTRRCPFCDV GHGRPDPLDK
DEPLNLAKTI AKLRLKYVVI TSVDRDDLRD GGSQHFVDCI TNIRELSPMT QIEILVPDFR
GRDDRALEIL KAAPPDVMNH NLETAPRLYK EARPGSDYQF SLNLLKKFKA LHPQVPTKSG
IMVGLGETDE EILQVMRDMR AHDIDMLTIG QYLSPSGSHL PVRRYVHPDT FKMFEEEAYK
MGFSHAAVGA MVRSSYHADQ QAHAAGV
|
|---|
| |