Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4880 |
Symbol | |
ID | 7971574 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 5197099 |
End bp | 5197779 |
Gene Length | 681 bp |
Protein Length | 226 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644795475 |
Product | lipoate-protein ligase B |
Protein accession | YP_002946750 |
Protein GI | 239817840 |
COG category | [H] Coenzyme transport and metabolism |
COG ID | [COG0321] Lipoate-protein ligase B |
TIGRFAM ID | [TIGR00214] lipoate-protein ligase B |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAGCACGG GCATCGAAGC GACATGGCTG GGCGCCGCCG ACTACGCCGC CACCTACGGC GCGATGAAGC AGTTCACGCT CGAACGCCTG CCCGAGACGC CCGATGCGCT GTGGATCTGC GAGCATGCGC CGGTCTTCAC GCAGGGGATC GCGGGCAGGC AGGACCACAT CCTGAACCCC GGCGCGATCC CGGTCGTGCA GACCGACCGC GGCGGCCAGG TCACCTTCCA CGGCCCGGGC CAGGTGGTGG CCTATCCGCT GATCGATCTT CGGCGCGCGG GCTACTTCGT GAAGGAATAC GTCTACCGCA TCGAGGAATC GGTGCTGCGC ACGCTGGCCC ACTTCGGCGT GACGGGCCAC CGCGTGGCGG GCGCACCCGG CATCTACGTG CGACTCGACG ATCCTTTTTC GCATGCCGCG CTGACCGGCC CGCTGCCCGC CGGCGACCCG TTCCGCGGCC TCGGCAAGAT CGCCGCGCTC GGCATCAAGG TGAGCCGCCA TGCCACCTAC CACGGCGTGG CGCTCAACGT CGCGATGGAC CTCGAACCCT TCTCGCGCAT CAACCCTTGC GGCTATGCGG GGCTGCAAAC GGTCGATCTT TCTACAATCG GGGTCCAAAC CACATGGGAA GAAGCTGCCC GGGTCCTGAG CCAGAAGCTC GGCACCTACC TGGCGCCTTA G
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Protein sequence | MSTGIEATWL GAADYAATYG AMKQFTLERL PETPDALWIC EHAPVFTQGI AGRQDHILNP GAIPVVQTDR GGQVTFHGPG QVVAYPLIDL RRAGYFVKEY VYRIEESVLR TLAHFGVTGH RVAGAPGIYV RLDDPFSHAA LTGPLPAGDP FRGLGKIAAL GIKVSRHATY HGVALNVAMD LEPFSRINPC GYAGLQTVDL STIGVQTTWE EAARVLSQKL GTYLAP
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