Gene Vapar_4867 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4867 
Symbol 
ID7971561 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5186609 
End bp5187778 
Gene Length1170 bp 
Protein Length389 aa 
Translation table11 
GC content70% 
IMG OID644795462 
ProductROK family protein 
Protein accessionYP_002946737 
Protein GI239817827 
COG category[G] Carbohydrate transport and metabolism
[K] Transcription 
COG ID[COG1940] Transcriptional regulator/sugar kinase 
TIGRFAM ID[TIGR00744] ROK family protein (putative glucokinase) 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGCGGTTGC TGGAGACCAC CTTCTGGTCG GCCGGCGGCT CGCGCCATGC CATGGCCGAA 
CAGCTCGGCT TCTCCAAGAG CAAGGCCAAT GCGCTGATCG CCGGCCTGGT CGAACAGGGC
CTCTTGGCCG AAGCGGGCCT GCAGCGCTCG TCGGGCGGGC GCCGCGCCGA GAACCTGCAG
CTGCATGCCG GGCTTGGCGT GCTCGTGGGC ATCGACATCG GCGCCACCAG CCTCGACGTT
GCGGTGCTGC GGCCCGATCT CAGCGTGCTC GCGCAGCACG ACGAGCCGGC CGATGTGCGC
GAAGGCCCGG CCGTGGTGCT GGCGCGGGTG CGCGTGCTGA TGCGCGAACT GCTCGCGCGC
TGCGGCCACG GCCCGAAGAA CGTGCTGGGC ATCGGCATCG GCGTGCCCGG CCCGGTCAAC
TTCGAGATCG GCCAGCTCGT GAATCCGCCG CTGATGCCGG CCTGGGACAG CTTCTCGATC
CGCGACTACC TGCGCGAGGA CTACGCGGCG CCCGTCTTCG TCGACAACGA CGTGAACCTG
ATGGCGCTCG GCGAACTGTG GCGGCTGAAG CGCTCGCTCA ACAACTTCCT CGTGATCAAG
ATCGGCACCG GCATCGGCTG CGGCATCGTC TGCCATGGCG AGGTCTATCG CGGCGCGGCC
GGGTCGGCCG GCGACGTGGG CCATATCTGC GTCGACCAGG ACGGGCCGCG CTGCCATTGC
GGCAACGTCG GCTGCGTCGA GGCCATGGCC GCGGGGCCGG CTATCACGCG CATGGCGGTG
CAGGCGGCCG AGGCTGGTGA AAGCGCCATG CTGGCCGAGT GCCTGCGCGT GCACGGGCGC
ATCGATGCCA TCGACGTGGG CCAGGCGAGC CGCGCCGGCG ATACCGCGGC CAACGGCATC
ATCCAGCGCG CCGGCAACCT CATCGGCCAG ATGCTGGCGT CGGTGGTGAA CTTCTTCAAT
CCCTCGCATG TGTTCATCGG CGGCGGCATC ACGCGCATCG GGCCGCTGTT CCTGGCGGCC
GTGCGGCAGA GCGTGTACCA GCGCTCGCTC GCGCTCTCGA CGCGGCACCT GGAAATCCAG
TACACGCCGC TGGGCGTGCA GGGCGGCCTG GTGGGTGCCG GCGTGCTCGC GATGCACGAG
ACACTGAAGG TCCGCGGAGT GGCGCCATGA
 
Protein sequence
MRLLETTFWS AGGSRHAMAE QLGFSKSKAN ALIAGLVEQG LLAEAGLQRS SGGRRAENLQ 
LHAGLGVLVG IDIGATSLDV AVLRPDLSVL AQHDEPADVR EGPAVVLARV RVLMRELLAR
CGHGPKNVLG IGIGVPGPVN FEIGQLVNPP LMPAWDSFSI RDYLREDYAA PVFVDNDVNL
MALGELWRLK RSLNNFLVIK IGTGIGCGIV CHGEVYRGAA GSAGDVGHIC VDQDGPRCHC
GNVGCVEAMA AGPAITRMAV QAAEAGESAM LAECLRVHGR IDAIDVGQAS RAGDTAANGI
IQRAGNLIGQ MLASVVNFFN PSHVFIGGGI TRIGPLFLAA VRQSVYQRSL ALSTRHLEIQ
YTPLGVQGGL VGAGVLAMHE TLKVRGVAP