Gene Vapar_4864 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4864 
Symbol 
ID7971558 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5183059 
End bp5184024 
Gene Length966 bp 
Protein Length321 aa 
Translation table11 
GC content64% 
IMG OID644795459 
ProductABC sugar transporter, periplasmic ligand binding protein 
Protein accessionYP_002946734 
Protein GI239817824 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG1879] ABC-type sugar transport system, periplasmic component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones14 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACAAGCT TCTTCACACG TCGCATCGCA CTCACGGCCG TGGCGGCCGC GGCGCTTTCG 
AGCCTGCCCG CATTCGCGGC CGAGAAAGTG AACCTCGGCG TCTCGATTCC GGCGGCCACG
CACAGCTTCA TGGGCGGCAT CAACTACTGG GCCAACCAGG CGAAGAAGGA CCTGGAGAAG
GAACACAAGG ACCTGAAGAT CACGATCAAG ACCGCGGCCA ACGCGCCCGA GCAGGCGAAC
CAGCTGCAAG ACCTGTCGAC CGTCACCAAG ATCAATGCGC TGGTGGTGTT TCCGTTCGAG
TCGGCCGCGC TGACCAAGCC GGTGGCGCAG GTCAAGGCCA AGGGCGCCTA CGTGACCGTG
GTCGACCGCG GCCTCACCGA TACCAGCGCG CAGGACGCCT ACGTGGCCGG CGACAACACC
GCCTTCGGCC GCATTCCGGC CGAGTACATC GCCAAGCAGC TCGGCGGCAA GGGCAACGTG
GTGGCGCTGC GCGGCATTGC GACCACGCTG GACAACGAGC GCATGGATGC CTTCAACGCG
GTGCTCAAGA ACTATCCGGA CATCAAGCTG CTCGACGCCA AGTACGCCAA CTGGAACCGC
GACGACGCCT TCAAGGTCAC GCAGGACTAC CTCACGCGCT TCAAGAACAT CGACGCCATC
TGGGCCGCCG ACGACGACAT GGCCGTGGGC GTGCTCAAGG CCATCGAGCA GGCCAAGCGC
GACGACATCA AGATCATCTT CGGCGGCGCG GGCGCCAAGG GCATGGTCAA GACCATCATG
GACGGCAAGG ACAAGCGCAT CGGCGCCGAC GTGAGCTACT CGCCCAAGTT CATCTACGAC
GCGATCAAGC TCACGGCCGA GGCGCGGCTC AAGGGCGAGA AGCTGCCTGC GACCACGATC
ATTCCTTCGG TGCTGATCAC CAAGGAAAAC GCCAAGGACT TCTACCACCC GAACTCGCCG
TTCTGA
 
Protein sequence
MTSFFTRRIA LTAVAAAALS SLPAFAAEKV NLGVSIPAAT HSFMGGINYW ANQAKKDLEK 
EHKDLKITIK TAANAPEQAN QLQDLSTVTK INALVVFPFE SAALTKPVAQ VKAKGAYVTV
VDRGLTDTSA QDAYVAGDNT AFGRIPAEYI AKQLGGKGNV VALRGIATTL DNERMDAFNA
VLKNYPDIKL LDAKYANWNR DDAFKVTQDY LTRFKNIDAI WAADDDMAVG VLKAIEQAKR
DDIKIIFGGA GAKGMVKTIM DGKDKRIGAD VSYSPKFIYD AIKLTAEARL KGEKLPATTI
IPSVLITKEN AKDFYHPNSP F