Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4864 |
Symbol | |
ID | 7971558 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5183059 |
End bp | 5184024 |
Gene Length | 966 bp |
Protein Length | 321 aa |
Translation table | 11 |
GC content | 64% |
IMG OID | 644795459 |
Product | ABC sugar transporter, periplasmic ligand binding protein |
Protein accession | YP_002946734 |
Protein GI | 239817824 |
COG category | [G] Carbohydrate transport and metabolism |
COG ID | [COG1879] ABC-type sugar transport system, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 14 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACAAGCT TCTTCACACG TCGCATCGCA CTCACGGCCG TGGCGGCCGC GGCGCTTTCG AGCCTGCCCG CATTCGCGGC CGAGAAAGTG AACCTCGGCG TCTCGATTCC GGCGGCCACG CACAGCTTCA TGGGCGGCAT CAACTACTGG GCCAACCAGG CGAAGAAGGA CCTGGAGAAG GAACACAAGG ACCTGAAGAT CACGATCAAG ACCGCGGCCA ACGCGCCCGA GCAGGCGAAC CAGCTGCAAG ACCTGTCGAC CGTCACCAAG ATCAATGCGC TGGTGGTGTT TCCGTTCGAG TCGGCCGCGC TGACCAAGCC GGTGGCGCAG GTCAAGGCCA AGGGCGCCTA CGTGACCGTG GTCGACCGCG GCCTCACCGA TACCAGCGCG CAGGACGCCT ACGTGGCCGG CGACAACACC GCCTTCGGCC GCATTCCGGC CGAGTACATC GCCAAGCAGC TCGGCGGCAA GGGCAACGTG GTGGCGCTGC GCGGCATTGC GACCACGCTG GACAACGAGC GCATGGATGC CTTCAACGCG GTGCTCAAGA ACTATCCGGA CATCAAGCTG CTCGACGCCA AGTACGCCAA CTGGAACCGC GACGACGCCT TCAAGGTCAC GCAGGACTAC CTCACGCGCT TCAAGAACAT CGACGCCATC TGGGCCGCCG ACGACGACAT GGCCGTGGGC GTGCTCAAGG CCATCGAGCA GGCCAAGCGC GACGACATCA AGATCATCTT CGGCGGCGCG GGCGCCAAGG GCATGGTCAA GACCATCATG GACGGCAAGG ACAAGCGCAT CGGCGCCGAC GTGAGCTACT CGCCCAAGTT CATCTACGAC GCGATCAAGC TCACGGCCGA GGCGCGGCTC AAGGGCGAGA AGCTGCCTGC GACCACGATC ATTCCTTCGG TGCTGATCAC CAAGGAAAAC GCCAAGGACT TCTACCACCC GAACTCGCCG TTCTGA
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Protein sequence | MTSFFTRRIA LTAVAAAALS SLPAFAAEKV NLGVSIPAAT HSFMGGINYW ANQAKKDLEK EHKDLKITIK TAANAPEQAN QLQDLSTVTK INALVVFPFE SAALTKPVAQ VKAKGAYVTV VDRGLTDTSA QDAYVAGDNT AFGRIPAEYI AKQLGGKGNV VALRGIATTL DNERMDAFNA VLKNYPDIKL LDAKYANWNR DDAFKVTQDY LTRFKNIDAI WAADDDMAVG VLKAIEQAKR DDIKIIFGGA GAKGMVKTIM DGKDKRIGAD VSYSPKFIYD AIKLTAEARL KGEKLPATTI IPSVLITKEN AKDFYHPNSP F
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