| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4858 |
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| Symbol | |
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| ID | 7971552 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5174594 |
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| End bp | 5177452 |
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| Gene Length | 2859 bp |
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| Protein Length | 952 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795453 |
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| Product | DEAD/H associated domain protein |
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| Protein accession | YP_002946728 |
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| Protein GI | 239817818 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1201] Lhr-like helicases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGCTCGAAG GCCGCGAGCC CCCATCCCCG CCTTCCCCCG GAAGGGGAAG GAGCAAGGCA
GCTGCAGTCA AGGCGGCACT CGACGCCTGG TCCGCGCCGC CGGACCCCGA ATTTCTCCCT
CCCCTTCCGG GGGAGGGCCG GGGTGGGGGC AAGCGGCGCA CCAAGAACCC GCCGCCTGTC
GTCGAAGGCC GCGAGCCCCC ATCCCTGCCT TCCCCCGGAA GGGGAAGGAG CAAGGCAGCG
GTAGTCAAGG CGGCGCTCGA CGCCTGGTTT GCAGCGCGCG GCTGGAAGCC TTTCAAGTTC
CAGCGCGACG TATGGAAGGC CGTGGCCGCG GGCCGCTCCG GGCTGCTGCA CGCGACCACC
GGCGCGGGCA AGACCTACGC GGTGTGGCTC GGCGCGCTGC AGGCGTTCTC GTCCGCGGCG
CCGCCGCCTT CGCGCAGCGC AAGGGCCACG CCGCCGCCGC CGCTCACCGT GCTGTGGATC
ACGCCCATGC GCGCGCTCGC GGCCGACACG CTGCGCGCGC TGCAGCAGCC GCTCGAAGCC
ATGGATGCCC AGGGCATCGA CCTGCACCGC TGGAGCGCCG GTGCGCGCAG CGGCGACACC
TCGTCGGCCG AGCGCAGCGC GCAGAACGAG CGCCTGCCCA CGGTGCTCGT CACCACGCCC
GAGAGCCTGT CGCTGCTGCT CGCGCGCGCC GACGCGAGCG AGGTGCTGGG CCGCGTGAGG
ATGGTGGTGG TCGATGAATG GCACGAGCTG CTCGGCAACA AACGCGGCGT GCAGGTGCAG
CTGGCGCTCG CGCGGCTCAG GCGCTGGAAT GCGGGGCTCG CGGTGTGGGG CATGTCGGCC
ACGCTCGGCA ACCTGCAGGA GGCCATGCAC GCGTTGCTCG GTGATCAAGA AGGCGTGCTG
GTGCAGGGCG CGGTGCCCAA GAAGCTGGTG GTCGATTCGC TGCTGCCCGG CCGCGCCGAG
CGCTTTCCGT GGGGCGGGCA CCTGGGCCTC ACGATGCTGC CGCAGGTGCT CGACGAGATT
GCCGCCAGCA GCACCACGCT GGTGTTCACC AACACGCGCT CGCAATCGGA GATCTGGTAC
CAGGCCATGC TCGAGGCGCG GCCCGAATGG GCCGGCCTCA TCGCACTGCA CCACGGCTCG
CTCGACCGCG CGGTGCGCGA GTGGGTCGAG CTGGGCCTCA AGAACGGCGA GCTCAAGGCC
GTGGTCTGCA CCTCGAGCCT GGACCTGGGC GTCGACTTTT TGCCGGTCGA GCGCGTGCTG
CAGATCGGTT CGCCCAAGGG CGTGGCGCGG CTGCTGCAGC GCGCGGGGCG CTCGGGCCAT
GCGCCGGGCC GGCCCTCGCG CATCACGCTC GTGCCCACGC ACAGCATCGA GATGGTCGAA
GGCGCCGCGG CGCGCGCGGC CATTGCGGCC GGCCACATCG AGGCGCGCCA CACGCCGGTG
CAGCCGCTCG ACGTGCTGGT GCAGCACCTG GTGACGGTGG CGCTCGGCGG CGGCTTCGTG
CCCGACGACC TGTATGCCGA AGTGCGCGGC ACCGCCGCCT ATGCGGATCT GTCGCGCGAG
AGTTGGGCGT GGTGCCTGGC CTTCGTCTCG CAGGGCGGGC CATCGCTGGC CGCGTATCCC
GACTACCGCC GCGCGGTGCC TGATGCGGAG GGCGTCTGGC GCGTACCGGA TGCGCGGCTC
GCGCGGCGCC ACCGCATGAA CATCGGCACC ATCGTGAGCG ATGCGAGCAT GGCGGTGCAG
TACATGGGCG GCGCGAGGAT CGGCAGCGTC GAGGAAGGCT TTGTGGCGCG CATGAAGCCC
GGCGACTGCT TCCTGTTTGG CGGGCGGCTG CTCGAACTCG TGCGCATCCA CGACATGACG
GCCTGGGTGC GGCGCGCCAC CGGCAAGCGC GCCGCGGTGC CGCGCTGGAA CGGCGGGCGC
ATGCCGCTGT CGACCACGCT GGCCGATGCG GTGGTGCAGC AGCTCGCGCT GGCCGGCGCG
GGGCGCTACA ACTCGCCCGA GCTGCAGTGC GTGCGGCCGC TGCTCGAGAT CCAGCAGCAA
TGGTCGGCCC TGCCCACGCC CGAGACGCTG CTGGCCGAAA CGCTGGCCAC GCGCGAAGGC
TCGCACCTGT TCCTCTATCC CTTCGCGGGA CGCCACGTGC ACATGGGACT TGCGAGCCTC
CTGGCCTGGC GCGTGGCGCA GCACGAGGCG CGCACTTTCT CCATTGCGGT GAACGACTAC
GGCTTCGAGC TGCTGAGCGC CACGCCGGTC GACTGGCCCG CGCTGCTGCC CCAGGTGCTG
CGCCTGCCGC AGGGCGAGGA TGCGCATGCC ACGCTGCTGC ACGAGGTGCT GGCCTCGCTC
AACGCGGGCG AACTCGCGCA GCGCCGCTTC CGCGAGATTG CGCGCGTCTC GGGGCTGATC
TTCCAGGGCT ATCCGGGCGA GAAGCGCAGC AGCCGGCAGC TGCAGGCCTC GTCCTCGCTG
TTCTGGGAGG TGTTCCGCAA GTACGACCCG GCGAACAAGC TGCTGCTGCA GGCCGAGCAG
GAACTGCTCG CGCAGGAGCT TGAAATCGGC CGCCTGGCAG CCAGCCTCGC ACGCATGGCG
ACCCAGCAGC TGGTGCTGAA GCCGCTCGAG CGGCCCACGC CTTTTTCGTT TCCGCTCATG
GTCGAGCTGT TCCGCGAGAA GCTGTCGAAC GAGAACGTGG CTGACCGCAT TGCGCGCATG
GTCGAGCAGC TCGAAAAGGC CGCGGGCGGC GTGGTCACGG CCGGCGGCGT GGAGCGCGTG
AAAAGCACGC TCGCGTTCGG CCAGGAAGGG CCGGGCAAGC CGCCGGCTGC GCCGCGCCGC
GAGCGCAGGC GGCCCTCACG GCCCTTGCCG CCGCTCTGA
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| Protein sequence | MLEGREPPSP PSPGRGRSKA AAVKAALDAW SAPPDPEFLP PLPGEGRGGG KRRTKNPPPV
VEGREPPSLP SPGRGRSKAA VVKAALDAWF AARGWKPFKF QRDVWKAVAA GRSGLLHATT
GAGKTYAVWL GALQAFSSAA PPPSRSARAT PPPPLTVLWI TPMRALAADT LRALQQPLEA
MDAQGIDLHR WSAGARSGDT SSAERSAQNE RLPTVLVTTP ESLSLLLARA DASEVLGRVR
MVVVDEWHEL LGNKRGVQVQ LALARLRRWN AGLAVWGMSA TLGNLQEAMH ALLGDQEGVL
VQGAVPKKLV VDSLLPGRAE RFPWGGHLGL TMLPQVLDEI AASSTTLVFT NTRSQSEIWY
QAMLEARPEW AGLIALHHGS LDRAVREWVE LGLKNGELKA VVCTSSLDLG VDFLPVERVL
QIGSPKGVAR LLQRAGRSGH APGRPSRITL VPTHSIEMVE GAAARAAIAA GHIEARHTPV
QPLDVLVQHL VTVALGGGFV PDDLYAEVRG TAAYADLSRE SWAWCLAFVS QGGPSLAAYP
DYRRAVPDAE GVWRVPDARL ARRHRMNIGT IVSDASMAVQ YMGGARIGSV EEGFVARMKP
GDCFLFGGRL LELVRIHDMT AWVRRATGKR AAVPRWNGGR MPLSTTLADA VVQQLALAGA
GRYNSPELQC VRPLLEIQQQ WSALPTPETL LAETLATREG SHLFLYPFAG RHVHMGLASL
LAWRVAQHEA RTFSIAVNDY GFELLSATPV DWPALLPQVL RLPQGEDAHA TLLHEVLASL
NAGELAQRRF REIARVSGLI FQGYPGEKRS SRQLQASSSL FWEVFRKYDP ANKLLLQAEQ
ELLAQELEIG RLAASLARMA TQQLVLKPLE RPTPFSFPLM VELFREKLSN ENVADRIARM
VEQLEKAAGG VVTAGGVERV KSTLAFGQEG PGKPPAAPRR ERRRPSRPLP PL
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