Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4858 |
Symbol | |
ID | 7971552 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5174594 |
End bp | 5177452 |
Gene Length | 2859 bp |
Protein Length | 952 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 644795453 |
Product | DEAD/H associated domain protein |
Protein accession | YP_002946728 |
Protein GI | 239817818 |
COG category | [R] General function prediction only |
COG ID | [COG1201] Lhr-like helicases |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | GTGCTCGAAG GCCGCGAGCC CCCATCCCCG CCTTCCCCCG GAAGGGGAAG GAGCAAGGCA GCTGCAGTCA AGGCGGCACT CGACGCCTGG TCCGCGCCGC CGGACCCCGA ATTTCTCCCT CCCCTTCCGG GGGAGGGCCG GGGTGGGGGC AAGCGGCGCA CCAAGAACCC GCCGCCTGTC GTCGAAGGCC GCGAGCCCCC ATCCCTGCCT TCCCCCGGAA GGGGAAGGAG CAAGGCAGCG GTAGTCAAGG CGGCGCTCGA CGCCTGGTTT GCAGCGCGCG GCTGGAAGCC TTTCAAGTTC CAGCGCGACG TATGGAAGGC CGTGGCCGCG GGCCGCTCCG GGCTGCTGCA CGCGACCACC GGCGCGGGCA AGACCTACGC GGTGTGGCTC GGCGCGCTGC AGGCGTTCTC GTCCGCGGCG CCGCCGCCTT CGCGCAGCGC AAGGGCCACG CCGCCGCCGC CGCTCACCGT GCTGTGGATC ACGCCCATGC GCGCGCTCGC GGCCGACACG CTGCGCGCGC TGCAGCAGCC GCTCGAAGCC ATGGATGCCC AGGGCATCGA CCTGCACCGC TGGAGCGCCG GTGCGCGCAG CGGCGACACC TCGTCGGCCG AGCGCAGCGC GCAGAACGAG CGCCTGCCCA CGGTGCTCGT CACCACGCCC GAGAGCCTGT CGCTGCTGCT CGCGCGCGCC GACGCGAGCG AGGTGCTGGG CCGCGTGAGG ATGGTGGTGG TCGATGAATG GCACGAGCTG CTCGGCAACA AACGCGGCGT GCAGGTGCAG CTGGCGCTCG CGCGGCTCAG GCGCTGGAAT GCGGGGCTCG CGGTGTGGGG CATGTCGGCC ACGCTCGGCA ACCTGCAGGA GGCCATGCAC GCGTTGCTCG GTGATCAAGA AGGCGTGCTG GTGCAGGGCG CGGTGCCCAA GAAGCTGGTG GTCGATTCGC TGCTGCCCGG CCGCGCCGAG CGCTTTCCGT GGGGCGGGCA CCTGGGCCTC ACGATGCTGC CGCAGGTGCT CGACGAGATT GCCGCCAGCA GCACCACGCT GGTGTTCACC AACACGCGCT CGCAATCGGA GATCTGGTAC CAGGCCATGC TCGAGGCGCG GCCCGAATGG GCCGGCCTCA TCGCACTGCA CCACGGCTCG CTCGACCGCG CGGTGCGCGA GTGGGTCGAG CTGGGCCTCA AGAACGGCGA GCTCAAGGCC GTGGTCTGCA CCTCGAGCCT GGACCTGGGC GTCGACTTTT TGCCGGTCGA GCGCGTGCTG CAGATCGGTT CGCCCAAGGG CGTGGCGCGG CTGCTGCAGC GCGCGGGGCG CTCGGGCCAT GCGCCGGGCC GGCCCTCGCG CATCACGCTC GTGCCCACGC ACAGCATCGA GATGGTCGAA GGCGCCGCGG CGCGCGCGGC CATTGCGGCC GGCCACATCG AGGCGCGCCA CACGCCGGTG CAGCCGCTCG ACGTGCTGGT GCAGCACCTG GTGACGGTGG CGCTCGGCGG CGGCTTCGTG CCCGACGACC TGTATGCCGA AGTGCGCGGC ACCGCCGCCT ATGCGGATCT GTCGCGCGAG AGTTGGGCGT GGTGCCTGGC CTTCGTCTCG CAGGGCGGGC CATCGCTGGC CGCGTATCCC GACTACCGCC GCGCGGTGCC TGATGCGGAG GGCGTCTGGC GCGTACCGGA TGCGCGGCTC GCGCGGCGCC ACCGCATGAA CATCGGCACC ATCGTGAGCG ATGCGAGCAT GGCGGTGCAG TACATGGGCG GCGCGAGGAT CGGCAGCGTC GAGGAAGGCT TTGTGGCGCG CATGAAGCCC GGCGACTGCT TCCTGTTTGG CGGGCGGCTG CTCGAACTCG TGCGCATCCA CGACATGACG GCCTGGGTGC GGCGCGCCAC CGGCAAGCGC GCCGCGGTGC CGCGCTGGAA CGGCGGGCGC ATGCCGCTGT CGACCACGCT GGCCGATGCG GTGGTGCAGC AGCTCGCGCT GGCCGGCGCG GGGCGCTACA ACTCGCCCGA GCTGCAGTGC GTGCGGCCGC TGCTCGAGAT CCAGCAGCAA TGGTCGGCCC TGCCCACGCC CGAGACGCTG CTGGCCGAAA CGCTGGCCAC GCGCGAAGGC TCGCACCTGT TCCTCTATCC CTTCGCGGGA CGCCACGTGC ACATGGGACT TGCGAGCCTC CTGGCCTGGC GCGTGGCGCA GCACGAGGCG CGCACTTTCT CCATTGCGGT GAACGACTAC GGCTTCGAGC TGCTGAGCGC CACGCCGGTC GACTGGCCCG CGCTGCTGCC CCAGGTGCTG CGCCTGCCGC AGGGCGAGGA TGCGCATGCC ACGCTGCTGC ACGAGGTGCT GGCCTCGCTC AACGCGGGCG AACTCGCGCA GCGCCGCTTC CGCGAGATTG CGCGCGTCTC GGGGCTGATC TTCCAGGGCT ATCCGGGCGA GAAGCGCAGC AGCCGGCAGC TGCAGGCCTC GTCCTCGCTG TTCTGGGAGG TGTTCCGCAA GTACGACCCG GCGAACAAGC TGCTGCTGCA GGCCGAGCAG GAACTGCTCG CGCAGGAGCT TGAAATCGGC CGCCTGGCAG CCAGCCTCGC ACGCATGGCG ACCCAGCAGC TGGTGCTGAA GCCGCTCGAG CGGCCCACGC CTTTTTCGTT TCCGCTCATG GTCGAGCTGT TCCGCGAGAA GCTGTCGAAC GAGAACGTGG CTGACCGCAT TGCGCGCATG GTCGAGCAGC TCGAAAAGGC CGCGGGCGGC GTGGTCACGG CCGGCGGCGT GGAGCGCGTG AAAAGCACGC TCGCGTTCGG CCAGGAAGGG CCGGGCAAGC CGCCGGCTGC GCCGCGCCGC GAGCGCAGGC GGCCCTCACG GCCCTTGCCG CCGCTCTGA
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Protein sequence | MLEGREPPSP PSPGRGRSKA AAVKAALDAW SAPPDPEFLP PLPGEGRGGG KRRTKNPPPV VEGREPPSLP SPGRGRSKAA VVKAALDAWF AARGWKPFKF QRDVWKAVAA GRSGLLHATT GAGKTYAVWL GALQAFSSAA PPPSRSARAT PPPPLTVLWI TPMRALAADT LRALQQPLEA MDAQGIDLHR WSAGARSGDT SSAERSAQNE RLPTVLVTTP ESLSLLLARA DASEVLGRVR MVVVDEWHEL LGNKRGVQVQ LALARLRRWN AGLAVWGMSA TLGNLQEAMH ALLGDQEGVL VQGAVPKKLV VDSLLPGRAE RFPWGGHLGL TMLPQVLDEI AASSTTLVFT NTRSQSEIWY QAMLEARPEW AGLIALHHGS LDRAVREWVE LGLKNGELKA VVCTSSLDLG VDFLPVERVL QIGSPKGVAR LLQRAGRSGH APGRPSRITL VPTHSIEMVE GAAARAAIAA GHIEARHTPV QPLDVLVQHL VTVALGGGFV PDDLYAEVRG TAAYADLSRE SWAWCLAFVS QGGPSLAAYP DYRRAVPDAE GVWRVPDARL ARRHRMNIGT IVSDASMAVQ YMGGARIGSV EEGFVARMKP GDCFLFGGRL LELVRIHDMT AWVRRATGKR AAVPRWNGGR MPLSTTLADA VVQQLALAGA GRYNSPELQC VRPLLEIQQQ WSALPTPETL LAETLATREG SHLFLYPFAG RHVHMGLASL LAWRVAQHEA RTFSIAVNDY GFELLSATPV DWPALLPQVL RLPQGEDAHA TLLHEVLASL NAGELAQRRF REIARVSGLI FQGYPGEKRS SRQLQASSSL FWEVFRKYDP ANKLLLQAEQ ELLAQELEIG RLAASLARMA TQQLVLKPLE RPTPFSFPLM VELFREKLSN ENVADRIARM VEQLEKAAGG VVTAGGVERV KSTLAFGQEG PGKPPAAPRR ERRRPSRPLP PL
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