| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4844 |
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| Symbol | |
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| ID | 7971538 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5162152 |
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| End bp | 5162910 |
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| Gene Length | 759 bp |
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| Protein Length | 252 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795439 |
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| Product | transcriptional regulator, TetR family |
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| Protein accession | YP_002946714 |
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| Protein GI | 239817804 |
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| COG category | [K] Transcription |
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| COG ID | [COG1309] Transcriptional regulator |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCGAAGA CCAAGGCGCT GGCCGCAGCC AGCAGCACGA AGAAGATCCC GGCCAAAAAA
AGCCCGGTGA AGATCCCGGT GACCCTTCCG GTGAAGGGCC CGGCGCGCAA GCGCGCGAAG
CCCGCCGTGC GCAGCGCATC CGCGGTGAGC CGCAGGCTGC GCCAGATCGA GGACAAGCGC
AGCGCCATCC TCGGCGCCGC GCTGGGGTTG TTCTCGCGCT TTGGCCTGCA TGGCACGTCC
ATCGACCAGG TGGCGGCGCG CGCCGATGTG TCCAAGAGCA ACCTGCTCTA CTACTTCGCG
AACAAGGAGG AGCTGTACGT CAACGTGCTG CGCGACCTGC TCGCGCTGTG GCTCGAACCG
CTGCGCGGCT TCAGCGCCGA GCAGGACCCG GCCGAAGCCA TCGGTGGCTA CATCCGCCGC
AAGCTCGTGG TCTCGCGCGA CCGGCCCGAT GCATCGCGCC TGTTCTGCCT CGAGATGATC
CAGGGCGCGC CGCTCCTGCG CGACGAGCTC GACCGCGAGC TGCGCACGCT GGTGGAGCGC
AAGTCGGAGG TCATCCGTTC ATGGATTGCC GCCGGCAAGC TCGCAGCGGT CGATCCGCAC
CACCTGATCT TCACGCTCTG GGCCGTCACG CAGCACTATG CGGATTTCGG CGTGCAGGTG
CAGGCGCTGA CGGGGCATAC GCTGGAGGAT CCGGCGTTCT TCGAGCAGAC GGTGGAGAAC
GTGCAGCGGA TCGTGCTGCA GGGCATTGCA CCGCGCTAA
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| Protein sequence | MPKTKALAAA SSTKKIPAKK SPVKIPVTLP VKGPARKRAK PAVRSASAVS RRLRQIEDKR
SAILGAALGL FSRFGLHGTS IDQVAARADV SKSNLLYYFA NKEELYVNVL RDLLALWLEP
LRGFSAEQDP AEAIGGYIRR KLVVSRDRPD ASRLFCLEMI QGAPLLRDEL DRELRTLVER
KSEVIRSWIA AGKLAAVDPH HLIFTLWAVT QHYADFGVQV QALTGHTLED PAFFEQTVEN
VQRIVLQGIA PR
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