| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4831 |
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| Symbol | |
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| ID | 7970302 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5148752 |
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| End bp | 5150026 |
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| Gene Length | 1275 bp |
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| Protein Length | 424 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795426 |
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| Product | efflux transporter, RND family, MFP subunit |
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| Protein accession | YP_002946701 |
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| Protein GI | 239817791 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.630346 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCCTCTCC TGCATGTTTC GCGTCAATCG TCGTTCTCGC CGCGCCTCGC GATCGTGGCC
GCTGCTGTGG TGTTGGCGCT CGCGGCCTGT TCCAAGGGCG ATGCGCCGGC CGGCCCGGGT
GGCGGTGCCG GCGGCGGCGG TGCCCGCCCT GCCCCTGAGG TGGGCGTGGT GGTTGCCGCG
CCCACCGACG TGGGCCTGGT GACCGAACTG CCGGGCCGGC TCGAAGCCTC GCGCGTGGCG
CAGGTTCGCG CCCGCGCCTC GGGCATCCTG CTGAAGCGCG AGTTCCGCGA AGGCAGCGAC
GTGAAGGCCG GCCAGCTGCT GTTCCGCATC GACCCGGCAC CGCTGGTGGC CGCCGCGCAA
AACGCGCAGG CCACGCTGGC CCGTGCCGAA GCCAACGCGG TGCAGGCCAA GGCACTGGCC
GACCGCTACA AGCCGCTGGT CGAGGCCAAC GCGGTGAGCA AGCAGGAATA CGCGACGGCC
GTGGCTTCGC AAAAGACGGC CGAGGCCGAC GTGGCCGCGG GCCGCGCCGC AGTGCAGACG
GCCAAGATCA ACCTGGGCTA TGCCGACGTG ACTTCGCCCA TTGCCGGCCG CATCGGCCGC
GCGCTGGTGA CCGAAGGCGC GCTGGTGGGC CAGGGCGACG CGACCGAACT GGCCGTGGTG
CAGCAGATTA ACCCGATGTA CGTGAACTTC ACGCAGTCGG CGTCCGACGT GCTGAAGCTG
CGCCGCGCAC TGGCCGCCGG CCAGTACAAG CGCGCGAGCG GCGAAGAAGC CGCCAGCGTG
AACGTGGTGC TGGAAGACGG CACCGACTAC GCCCTGCCCG GCAAGCTGCT GTTCTCCGAC
CTGACGGTGG ATTCGACCAC CGGCCAGGTC ACGCTGCGCG CCGAGGTGCC CAACCCGAAG
GGCGAGCTGC TGCCCGGCCT GTACGTGCGC GTGCGGCTGG AGCAGGCGCA GGCCACCAAC
GCGATCACGA TTCCCCAGCA GGCGGTCACG CGCACGCAGC AGGGCGACAC GGTGTCGGTG
GTGAGCGCCG ACGGCAAGAT CAGCCAGCGC ACGGTGAAGA TCAGCGCCGC CAAGGACAAC
CAGTGGGTGG TGCTCGATGG CCTGAAGGCG GGCGAGCAGG TGATGGTCGA CGGCTTCCAG
AAGCTGCAGA TGATGCCGCC CGGCACGCCG GTGAAGGCGG TGCCATGGAA GAAGCCGGAC
CCGAGTGCGG CTCCGGCGCC TGCGGCACCC GCTCCTGGTG CCGCCCCCGC GGCCGCACCG
GCCGAGAAGA AGTAA
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| Protein sequence | MPLLHVSRQS SFSPRLAIVA AAVVLALAAC SKGDAPAGPG GGAGGGGARP APEVGVVVAA
PTDVGLVTEL PGRLEASRVA QVRARASGIL LKREFREGSD VKAGQLLFRI DPAPLVAAAQ
NAQATLARAE ANAVQAKALA DRYKPLVEAN AVSKQEYATA VASQKTAEAD VAAGRAAVQT
AKINLGYADV TSPIAGRIGR ALVTEGALVG QGDATELAVV QQINPMYVNF TQSASDVLKL
RRALAAGQYK RASGEEAASV NVVLEDGTDY ALPGKLLFSD LTVDSTTGQV TLRAEVPNPK
GELLPGLYVR VRLEQAQATN AITIPQQAVT RTQQGDTVSV VSADGKISQR TVKISAAKDN
QWVVLDGLKA GEQVMVDGFQ KLQMMPPGTP VKAVPWKKPD PSAAPAPAAP APGAAPAAAP
AEKK
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