| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4827 |
|---|
| Symbol | |
|---|
| ID | 7970297 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5144805 |
|---|
| End bp | 5145707 |
|---|
| Gene Length | 903 bp |
|---|
| Protein Length | 300 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 69% |
|---|
| IMG OID | 644795422 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002946698 |
|---|
| Protein GI | 239817788 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.133031 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCGACT CCCAACAGCT GCGCGCCTTC GTCTCGGTGG CCGACCACGG CAGCGTGACG
CGCGCGGCCG ACGCCATGCA CCTGACGCAA TCGGCCGTGA GTGCGCAGAT CCGGCGGCTC
GAAGAGCAGC TGGGCTGCCG CGTCTTCGAT CGCACCACCC GCTCGCTGCA GCTCACGGCC
CAGGGCAGCG TGCTGCTGAG CTATGCGAGG AGCATCCTCA AGCTGCAGCA GCAGGCGGTC
TCGCGGCTTG CGGCGCCGCG CCATGCGCCG GCCACGCTGC GCCTCGGATG CTCGGAGGGC
TTTCCCAGCG AATGGCTGTT CGGCGCGCTC GCGGGCTTTC GCGAGCGCAG GCCCGACGTG
CATGTGGAAA TCAGCTGCGG CATCAGCACG ATGCTGGCCA AACAGGTGCG GCAGCACTCG
CTCGACCTGA TGGTCGGCAC GGTCTGCGAC GCCGGCAGCG ACACCGAAAC GCTCTGGATG
GAGCCGCTGG TCTGGGCCTT TTCGGCAAAG GCGCTGCTCG ACCCCGAGGC GCCCGTGCCG
CTCGCGTTCC TGTCGGAGCC CTGCCCGTTC CGCGAAGCCG CGCTCGCCTC GCTGGCCGGG
CATGGCACGA CCCACTGGCA GATCGTCCTT ACTGCGCAGA GTTCTGGCGC ATTGGTGGCG
GCTGCAGCCG CCGGTTTGGC CATCACCGTG CTGACGCCTT CGGGCATGCC GTCTGGCCTG
CGCTCCATTC CGCCGGGAAG CTTTTTGCCG GTGCTGCCGG CGGCGCGGTT TGTGATTCAG
CACTGGAAAA GTGGCACTCC TTCCGAAGCT CTGTCAGCGC TGGCCGACGA CGTTCGCGAG
GCTTGTTTTC GGTGGCGCGG GGCGCATGCC GGTGCGTTCG AGTCGCGGGT GCGCACGGCG
TGA
|
|---|
| Protein sequence | MLDSQQLRAF VSVADHGSVT RAADAMHLTQ SAVSAQIRRL EEQLGCRVFD RTTRSLQLTA
QGSVLLSYAR SILKLQQQAV SRLAAPRHAP ATLRLGCSEG FPSEWLFGAL AGFRERRPDV
HVEISCGIST MLAKQVRQHS LDLMVGTVCD AGSDTETLWM EPLVWAFSAK ALLDPEAPVP
LAFLSEPCPF REAALASLAG HGTTHWQIVL TAQSSGALVA AAAAGLAITV LTPSGMPSGL
RSIPPGSFLP VLPAARFVIQ HWKSGTPSEA LSALADDVRE ACFRWRGAHA GAFESRVRTA
|
|---|
| |