| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4824 |
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| Symbol | |
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| ID | 7970294 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5142432 |
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| End bp | 5143253 |
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| Gene Length | 822 bp |
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| Protein Length | 273 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795419 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_002946695 |
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| Protein GI | 239817785 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
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| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.643163 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAGCTTCA CTCCTCCTGC GCTGCCACTG GACCTGTCGG GTCGGGTCGT CTTCGTGCTG
GGCGCGGGCT CGGCGGGACC GGGCTGGAGC ATCGGTCGGG CGTCGAGCGT CACCTACGCC
CGGCTCGGCG CGCACGTGTG CGTGGCGGAC CGCGACGCCG CCTCCGCCGA GGAAACCACC
GCGCTGATCC GAGCCGAAGG CGGCACGGCC GAGACCTTCG TCGGCGATGC GGCGGACGAA
GCCGACGTGG TTCGGCTCTT TGGCGAAGCA CGCGAGCGCT TCGGCACGGT CGACGTGCTG
CACCACAACG TGGGCATCGG CAAGACCGGC GGGCCCATGG AAACCAGCGC CGAGGACTTC
GACCGCATCC ACGCAGTGAA CGTGCGCAGC CTGCTCCTGG CCACCCGGCA GGTGCTGCCC
GGCATGGTCG AGCGCGGGCG CGGCGCCATC GTCGCCATCT CGTCGATCGC GGGCATGCGC
TACCTGGGCT ATCCGCACCT GGCCTACGGC GTGACCAAGG CCGCGGTCAC GCAGTTCACG
CGCATGGTGG CGCAGCAATA TGCAGCCCAG GGCGTGCGTG CCAACACCGT CGTGCCAGGG
CTGATCGACA CGCCGCGCAT CGCCACCACG GTGGCGAAGA TGTTCTCGGA CACCAGCCTG
GAAGAGGCCA AGGCAGCCCG CGCGCGGCAG GTGCCCGTGG GCCGCATGGG CACGGCCTGG
GACGTGGCCC ATGCCTGCGC GTTCCTGGCG TCGGATGCGG CCGCCTATGT GACCGGCACC
GAGCTGCTGG TGGATGGCGG CATCACCGGC AAGTTCGTGT AG
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| Protein sequence | MSFTPPALPL DLSGRVVFVL GAGSAGPGWS IGRASSVTYA RLGAHVCVAD RDAASAEETT
ALIRAEGGTA ETFVGDAADE ADVVRLFGEA RERFGTVDVL HHNVGIGKTG GPMETSAEDF
DRIHAVNVRS LLLATRQVLP GMVERGRGAI VAISSIAGMR YLGYPHLAYG VTKAAVTQFT
RMVAQQYAAQ GVRANTVVPG LIDTPRIATT VAKMFSDTSL EEAKAARARQ VPVGRMGTAW
DVAHACAFLA SDAAAYVTGT ELLVDGGITG KFV
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