| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4822 |
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| Symbol | |
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| ID | 7970292 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5140118 |
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| End bp | 5141632 |
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| Gene Length | 1515 bp |
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| Protein Length | 504 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795417 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_002946693 |
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| Protein GI | 239817783 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTTTCCGA TCGACTTCTT CTGGCGCGCC GCGGTGCGCT GGCCCGACAA CATTGCCATC
GACGCCCCCG AGGGCGCCAT CCGCTACCAG GAACTTGCTG CCCAGGTGGC GGCGCTGGCG
GCCGCGCTGG TCGCGCTCGA CCCCGCGCCG CAAAGCCGCG TCGCCATCTG CGCGAAGAAC
AGCGCGGAGC ACATTGCCGC GCTGCTCGCG GTGCTGGCCT GCGGCAAGGT TTGGGTGCCG
CTGAATCCGC AGAGCACGCG GCCCGAGATC CGCCGCATCG TCGATGCCAC CGAACCTTCG
ATCCTCGTGC TCGACGCGGC CTGCGCCGCG CTGCTCGACG GTGCGCCCGG CGCGCGCATC
CACACCGGCA CGGCGCCGCA GCACGAAGCC ACCATCGCGG CGCTGGTGAC CCGGCATGCA
GGCGCGCCGC GCCCTTCCTT CGCGCTGCCG CTGGACGCCA CGCAGGCGAT CAAATTCACC
GGCGGCACCA CCGGCGCGCC CAAGGGCGTG ATGCAGCCCT ACCGCGCATG GCTCGCCAAC
ATCGCCAACC AGATCCACGC CTGGGGCTTC GACGAGCACG AGCGCTATGT GGTGGCGGCG
CCAATCACGC ACGGTACCTC GACCTACGTG CTGCCCATCC TGGCGCAGGG CGGCTGCCAC
GTGGTGCTGC CCGCGGCCGG CGCCGAGGCC GTGCGCACGG CCTTCCGCGA ACGCGGCGGC
ACGACATGCT TCATGCCGCC CACGCTGGTG TACATGCTGA TGGCGCTGCC GGGCGTGTCG
CGCGCCGACT TTCCGCACCT GCGCCGGCTG ATCTACGGCG GCGCGCCGAT GCCTTCGGAA
AAGATCCGCG AGGTGCGGGA ATTCTTCGGC CCGGTGCTGG GCACCACCTA CGGCCAGACC
GAGGCGCCCC AGATCCTCAC GGTGATGCAC CCCGAAGACT TCGAGGACGA ACGCAACTGG
GCCGCCGTGG GCCGCACCGC GTGGTTCAGC GATGTGGCCA TCATGGCGCC GGACGGCCGG
CTGCTGCCCG CGGGCGAGGT CGGCGAAGTG GTGGCGCGCG GCGACCTGCT GATGGCCGGC
TACTGGCGCC TGCCCGACAA GACCGCCGAG ACGCTGGTGG ACGGCTGGCT GCACACCGGC
GACCGCGGCC TCGTCGACGA GCGCGGCTAC CTCTACCTAA AGGACCGGCT GAAGGACATG
GTCATCACGG GCGGCTTCAA CGTGTACCCG GTGGACGTGG AGAACGCGCT GGGCCAGCAC
CCCGCCGTGC ACGAATGCGC CGTGTTCGGC ATTCCCGACG ACAAGTGGGG CGAGGCGGTG
CAGGCCGCCG TGCAGCTGCG CCCCGGCCGC CACGCCACCG AAGCCGAGCT GATTGCCTTC
GTGCGCGAAC GCCTGGGCCC GGTGCAGACG CCCAAGCACA TCCATTTCCA CGAGGCCCTG
CCGCGCTCGC CCGTGGGCAA GGTGCTCAAG AGCGCCGTGC GCGAACTCGC CATGGCGGCC
GCCGCCACAT CCTGA
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| Protein sequence | MFPIDFFWRA AVRWPDNIAI DAPEGAIRYQ ELAAQVAALA AALVALDPAP QSRVAICAKN
SAEHIAALLA VLACGKVWVP LNPQSTRPEI RRIVDATEPS ILVLDAACAA LLDGAPGARI
HTGTAPQHEA TIAALVTRHA GAPRPSFALP LDATQAIKFT GGTTGAPKGV MQPYRAWLAN
IANQIHAWGF DEHERYVVAA PITHGTSTYV LPILAQGGCH VVLPAAGAEA VRTAFRERGG
TTCFMPPTLV YMLMALPGVS RADFPHLRRL IYGGAPMPSE KIREVREFFG PVLGTTYGQT
EAPQILTVMH PEDFEDERNW AAVGRTAWFS DVAIMAPDGR LLPAGEVGEV VARGDLLMAG
YWRLPDKTAE TLVDGWLHTG DRGLVDERGY LYLKDRLKDM VITGGFNVYP VDVENALGQH
PAVHECAVFG IPDDKWGEAV QAAVQLRPGR HATEAELIAF VRERLGPVQT PKHIHFHEAL
PRSPVGKVLK SAVRELAMAA AATS
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