Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4814 |
Symbol | |
ID | 7970284 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 5133126 |
End bp | 5134262 |
Gene Length | 1137 bp |
Protein Length | 378 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644795409 |
Product | twitching motility protein |
Protein accession | YP_002946685 |
Protein GI | 239817775 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG5008] Tfp pilus assembly protein, ATPase PilU |
TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGGAACGCG ATCAAGCCAG CCAGTTCATC AACGACCTGC TCAAGCTCAT GGTGAGCCGC AACGGCAGCG ACTTGTTCAT CACCGCGGAC TTTCCGCCCG CGATCAAGGT CGACGGCAAG GTCACCAAGG TGTCGCAGCA GGCGCTGGGG GCGCAGCACA CGCTGGCGCT CACGCGCTCG GTCATGAACG ACCGCCAGAC GGCGGAGTTC GAGCGCACCA AGGAATGCAA CTTCGCGATC TCGCCGACCG GCATCGGCCG CTTCCGCGTG AACGCCTTCG TGCAGCAGGG CAAGGTCGGC ATGGTGCTGC GGACCATTCC GGCCAAGCTG CCGACCATCG ACGGGCTGGG CATGCCGCAG ATCCTGAAGG ACGTGTCGAT GACCAAGCGC GGCCTCACCA TCCTGGTGGG CGCCACGGGC TCGGGCAAGT CGACCACGCT GGCCGCCATG ATCGACTGGC GCAACGAAAA TTCCTACGGC CACATCGTGA CGGTGGAGGA CCCGGTCGAA TTCGTGCATC CGCACAAGAA CTGCGTGGTC ACGCAGCGCG AAGTGGGCAT CGACACCGAC AGCTGGGAAG CCGCGCTCAA GAACACGCTG CGCCAGGCGC CCGACGTGAT CCTGATGGGC GAAATCCGCG ACCGCGAGAC CATGGAGCAC GCCGTGGCCT TTGCCGAGAC CGGCCACCTG TGCATGGCCA CGCTGCACGC CAACAGCGCC AACCAGGCGC TGGACCGGAT CATCAACTTC TTCCCCGAAG AGCGTCGCGC GCAACTGTTG ATGGACCTGT CGCTGAACCT GCGCTCGCTG ATCTCCCAGC GCCTGGTGCC CACCGAGGAC GGCCAGGGCC GCGTGGCGGC GGTGGAAGTG CTGCTGAACA CGCCGCTCAT TTCCGACCTG ATCTTCAAGG GCGAGGTGGG CGAGATCAAG GAGATCATGC GCAAAAGCCG CAACCTCGGC ATGCAGACCT TCGACCAGGC GCTGTTCGAC CTGTTCGAAA GCCACTCGAT CACCTTCGAG GACGCCATCC GCAACGCCGA TTCGGCCAAC GACCTGCGGC TGCAGATCAA GCTCAACAGC CAGCGCGCGC GCAGCACCGA CCTCTCGGCC GGCACCGAGC ACTTCGCGAT CGTGTAG
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Protein sequence | MERDQASQFI NDLLKLMVSR NGSDLFITAD FPPAIKVDGK VTKVSQQALG AQHTLALTRS VMNDRQTAEF ERTKECNFAI SPTGIGRFRV NAFVQQGKVG MVLRTIPAKL PTIDGLGMPQ ILKDVSMTKR GLTILVGATG SGKSTTLAAM IDWRNENSYG HIVTVEDPVE FVHPHKNCVV TQREVGIDTD SWEAALKNTL RQAPDVILMG EIRDRETMEH AVAFAETGHL CMATLHANSA NQALDRIINF FPEERRAQLL MDLSLNLRSL ISQRLVPTED GQGRVAAVEV LLNTPLISDL IFKGEVGEIK EIMRKSRNLG MQTFDQALFD LFESHSITFE DAIRNADSAN DLRLQIKLNS QRARSTDLSA GTEHFAIV
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