| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4813 |
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| Symbol | |
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| ID | 7970283 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5132054 |
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| End bp | 5133097 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644795408 |
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| Product | twitching motility protein |
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| Protein accession | YP_002946684 |
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| Protein GI | 239817774 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2805] Tfp pilus assembly protein, pilus retraction ATPase PilT |
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| TIGRFAM ID | [TIGR01420] pilus retraction protein PilT |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGGACATTA CCCAGCTGCT GGCATTCAGC GTCAAGAACA AAGCCTCCGA CCTGCACTTG
TCGGCCGGCC TGCCGCCGAT GATCCGCGTC CACGGCGACG TGCGGCGCAT CAACGTCGAT
GCGCTCGACC ACAAGTCGGT GCACGCCATG GTGTACGACA TCATGAGCGA CACGCACCGA
AAGCACTATG AAGAGTTCCT GGAGGTCGAC TTCTCGTTCG AGATCGACGG CCTCGCGCGC
TTCCGGGTGA ATGCCTTCAA CCAGGCGCGC GGCGCGGCGG CGGTGTTCCG GACCATTCCC
TCGAAGATCC TCACGCTGGA GCAGCTCAAC GCGCCCAAGA TTTTCGCGGA ACTGGCGCTC
AAGCCGCGCG GGCTGGTGCT GGTGACCGGG CCCACCGGCT CGGGCAAGTC GACCACCCTG
GCCGCGATGG TCAACTACCT GAACGAAAAC GAGTACGGCC ACATCCTCAC GGTGGAAGAC
CCGATCGAAT TCGTGCACGA ATCCAAGAAG TGCCTGATCA ACCAGCGCGA GGTCGGGCCG
ATGACGCTGT CGTTCTCCAA CGCGCTGCGC TCGGCGCTGC GCGAAGACCC GGACGCCATC
CTGGTGGGCG AGCTGCGCGA CCTGGAAACC ATTCGCCTGG CCATGACCGC GGCCGAAACG
GGCCACCTGG TGTTCGGCAC GCTGCACACC TCGTCGGCCG CCAAGACCAT CGACCGGATC
ATCGACGTGT TCCCGGGCGA GGAAAAGGAA ATGATCCGCG CCATGCTGTC CGAATCCTTG
CAGGCCGTGA TCTCGCAGAC GCTGTGCAAG ACCAAGGACG GCCAGGGCCG CGTGGCGGCG
CACGAGATCA TGCTGGGCAC GCCGGCCATC CGCAACCTGA TCCGCGAGGC CAAGGTGGCG
CAGATGTATT CGGCCATCCA GACCGGCCAG GGCGCGGGCA TGCAGACGCT GGACCAGAAC
CTGACCGACC TCGTGCGCCG CAATGCCATT TCGGCGGCGG AAGCACGCGG CAAGGCCAAG
ATCCCCGAAA ATTTCCCTGG CTGA
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| Protein sequence | MDITQLLAFS VKNKASDLHL SAGLPPMIRV HGDVRRINVD ALDHKSVHAM VYDIMSDTHR
KHYEEFLEVD FSFEIDGLAR FRVNAFNQAR GAAAVFRTIP SKILTLEQLN APKIFAELAL
KPRGLVLVTG PTGSGKSTTL AAMVNYLNEN EYGHILTVED PIEFVHESKK CLINQREVGP
MTLSFSNALR SALREDPDAI LVGELRDLET IRLAMTAAET GHLVFGTLHT SSAAKTIDRI
IDVFPGEEKE MIRAMLSESL QAVISQTLCK TKDGQGRVAA HEIMLGTPAI RNLIREAKVA
QMYSAIQTGQ GAGMQTLDQN LTDLVRRNAI SAAEARGKAK IPENFPG
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