Gene Vapar_4798 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4798 
Symbol 
ID7970268 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp5115966 
End bp5116601 
Gene Length636 bp 
Protein Length211 aa 
Translation table11 
GC content66% 
IMG OID644795393 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002946669 
Protein GI239817759 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGGCCAGTT CCAACACCAC GCGCGACCGC ATCCTGCAGG CCAGCCTCGC GCTGTTCAAT 
GCGCAAGGCC TGGCGGCGGT GTCCACGCAC AAGATCGCGG CCGAGCTCGG CATCAGCCCG 
GGCAACCTGC ACTACCACTT CAAGGCCAAG CAGCTGATCG TTGAGTGGCT GTTCCGGCGC 
TTCGAGCAGC GGCTCGAAGT GCTCGACGGC TCCGCGGGTT CGATCACCGC CATCGACGAC 
CTCTGGCTCG CGCTGCACCT GCGCTTCGAG GCCATCGACC AGTACCGCTT CATCTACCGC 
GACATGGCCT TCCTGGCCGG CGAATACCCC GCGCTCGGCC AGCGCGCGCA AGCGCTTACC 
GCGCAGAACC TGCTGGCGGC CCAGGCGCTG TGCGAAGGGC TGGTGGCCTC GGGCGTGATC 
GAGACCAGCG CCGAGCAGGC CCGCATCCTC GCCCTGCAGA TGGTCTTCAC CACCACCTGC 
TGGCTTTCGT TCGAACGCCT GGTGCCGGGG CGCGACGCGC TCGCGCAGGC CGACCCGGGA 
TTGGCGGCCT TCTACACGCT CACCCTGATT TCCCCGTATG TTTCCAGCGA ATCGAGGGCT 
TACCTTGATT ACCTGCGGGG CAAATACCTC GGATAA
 
Protein sequence
MASSNTTRDR ILQASLALFN AQGLAAVSTH KIAAELGISP GNLHYHFKAK QLIVEWLFRR 
FEQRLEVLDG SAGSITAIDD LWLALHLRFE AIDQYRFIYR DMAFLAGEYP ALGQRAQALT 
AQNLLAAQAL CEGLVASGVI ETSAEQARIL ALQMVFTTTC WLSFERLVPG RDALAQADPG 
LAAFYTLTLI SPYVSSESRA YLDYLRGKYL G