Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4795 |
Symbol | |
ID | 7970265 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | + |
Start bp | 5110167 |
End bp | 5111429 |
Gene Length | 1263 bp |
Protein Length | 420 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 644795390 |
Product | Extracellular ligand-binding receptor |
Protein accession | YP_002946666 |
Protein GI | 239817756 |
COG category | [E] Amino acid transport and metabolism |
COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 21 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAAGCCCA AGCACGCGCC ACTGGCGCCG ATCGCCCTTG CCTGCCTGCT GGCCGCTGCC GGCGGCGCCC AGGCGCAGCA ACAGCAGCCC AGCTACAAGA TCGCCTACAT CGACCCGCTC TCAGGGCCGT TCGCGAACGT GGGCGAGCTG ATGCTCACGC ACACGCAGTA CGCCATCGAG GAGATCAACG CCAAGGGCGG TGTGCTCGGC GGCACGAAGC TGCAGTTGCT GCAGTTCGAC AGCAAGCTCT CGGCGCAGGA GAGCCAGAGC GCGCTGCAGG CGGCCATCGA CCAGGGCGCC CAGGCCATCG TCACGGGTGG GTCGGGCTCC TCGGTGGTGT CGGCACTGGT GCAGTCGGTG GCGCGCTGGA ACCAGCGCAA TCCGGGCAAG GAGCTGATCG TGCTGAACCA TTCGTCGATC GACCCCGAGA TGACCGGCAA GAACTGCAGC TTCTGGCACT TCCAGACCGA GGCCAACACG GCGATGAAGA TGAAGGCGCT GGCCAACTAC ATCAAGAAGA CGCCGGACGT GAAGAAGGTC TACCTGCTGA ACCAGGACTA CGCCCACGGC AAGCAGTGGG CGAGCCACGG GCGCCAGCTG GTGGGCCTGG CGCGGCCCGA CGTGCAGTTC GTCGGCGAAA CGCTGCATCC GATCGGCCGC GTAAAGGACT TCTCGCCCTA CATCGCCAAC ATCAAGCAGA GCGGCGCCGA CTCGGTCATC ACCGGCAACT GGGGCCAGGA CATGACGCTG CTGCTCAAGG CCGCGGGCGA TGCGGGCTAC AACCTGCGCT ACTTCAACCA CAGCGCGGGC TCGGTGCCGG GCACGGTGCT GGCGGTGTCG CAGGCCAAAC TCGGGCAGCT GACCTGGGTG GCCGAGTGGC ATCCGGGGCA GGCCGACACG CCGCGCGCCG ATGCGCTGGC CAAGGCGTAC AAGGCGAAGA CGGGCAAGGA CTTCCTCGCG CCGCGCATCG ACTTCACGCC GCGCCTTCTG GCCGCCGCCA TCAACAAGGC CGGCTCGACC GACACGGTGA AGGTGGCGCG TGCGCTCGAG GACATGAGCT ACGACTCGGT GGTGGGGCCG ATCCGCATGC GCGCCGAGGA CCACCAGTTG CTGCTGCCGC AGGTGGTCAA CACGATCGCG CCGGTCGATG GCAAGAGCGT GAAGGTGGGC TGGGAAGGGA CGAACTACGG CTTCCGGACG GACGCTGTCT ACACGGGCAA CGAGCTGGCG CAGGGGTCTG AGTGCAAGAT GGTTCGGCCT TGA
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Protein sequence | MKPKHAPLAP IALACLLAAA GGAQAQQQQP SYKIAYIDPL SGPFANVGEL MLTHTQYAIE EINAKGGVLG GTKLQLLQFD SKLSAQESQS ALQAAIDQGA QAIVTGGSGS SVVSALVQSV ARWNQRNPGK ELIVLNHSSI DPEMTGKNCS FWHFQTEANT AMKMKALANY IKKTPDVKKV YLLNQDYAHG KQWASHGRQL VGLARPDVQF VGETLHPIGR VKDFSPYIAN IKQSGADSVI TGNWGQDMTL LLKAAGDAGY NLRYFNHSAG SVPGTVLAVS QAKLGQLTWV AEWHPGQADT PRADALAKAY KAKTGKDFLA PRIDFTPRLL AAAINKAGST DTVKVARALE DMSYDSVVGP IRMRAEDHQL LLPQVVNTIA PVDGKSVKVG WEGTNYGFRT DAVYTGNELA QGSECKMVRP
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