| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4784 |
|---|
| Symbol | |
|---|
| ID | 7970254 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5096537 |
|---|
| End bp | 5097772 |
|---|
| Gene Length | 1236 bp |
|---|
| Protein Length | 411 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 644795379 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_002946655 |
|---|
| Protein GI | 239817745 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 7 |
|---|
| Plasmid unclonability p-value | 0.0507108 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCCGACGC TTGTCGCCTC CCAGCTGCCG TCCTCCGCCG CCCCGCCCGC ACGCCCGTCA
TGGCGCGCGC TGGCCGGGCT GACGCTGGCG GTGGCGCTGG CCCACGTGCT GTTGCTGGAC
CTGGCTCCCA CGGCCATCGG GCCCGACCCC TCGCCGCTCG CGAACAAGTT CATCACCCGC
ACCATCGTGA TTGCACCGCC GGCCGCGGAA AAGCCGGCCG CGCCGGCCGC CGCAGCGCCA
GTGGCCGAGG CCAAGCCGCC GCCGCCCGCA AAGCCGCGCC GGCCGCGCGA GCCGTCCAGG
CCCAGGCCGG TGGCGCCACC ACCACCCGAG CCGGTGCCGC AGCCGGCGCC CCAGGTTTCG
GAACAGCCCC CGGCGCCCCC CGCACAGACG CCCGACCTCA CGGCGCAGAA CGCTACTGAT
TCAGGAGCGA CACCTCCCGA CCAGGCAGCC AGCGCCCCGG CGGGCGCCAT GCTGGGCGGG
GCGGGCAGCA CGGCCAACGC CGGTGTCGGC AACGGGCCGC CCGGCGAGGC CGCCGGCGCC
GCCAGCGCCG CAGCGGGCAA TGTCGTCGGA CCCGAAGCGC TGCGCATCCC CGGTTCGGTG
AAGCTCGCCT TCGCGGTCAC GGGCCAGCAG GGCGCCTCGC CGATGCAGGG CGTTTTCGGC
GACCTGGTCT GGCTGCAGGA CGGCAGCAGC TACGACGCCC GGCTGTCGCT CAAATTCCTG
TTCCGGACCA TCCGCAGCCA GCACAGCACC GGCCGGATCG GCCCCACCGG CATCGAGCCG
GCGCGCTTTT CGGAAAGCCG CAAGGGCGAG GTCGCCTCGC ACTTCCTGCG CGACCAGGGC
CAGATCATGT TCAGCAACAA CGCGCCCAGC GTGCCCCTGC TGCCCGGCGC GCAGGACCGG
CTCAGCGTGG TGATGCAGCT GGGCGGCATG CTGGCGGGCG ATCCGGGCCG GTATCCGGCC
GGCAGCCGCA TTTCCATCCA GACCGCCGGG CCGCGCGACG CGGGCGTCTG GGTGTTCAAC
ATCGAGGGCG AGGAGCAGAT GAGCGTGCCG GCGGGCGACT ACGCCGTGCG CAAGCTCACG
CGCAGCCCGC GGCGCGAGTT CGACGACAAG ATCGAGATCT GGCTCGCGCC GGCGCTGGGG
TACCTGCCGG TGCGGATGAA ACAGACACAG CCCAACGGCG ACTTCGCCGA CATGCAGTTG
CGCGAATCCC TTCCGGCGGG GCCGGCCAGC CGATAG
|
|---|
| Protein sequence | MPTLVASQLP SSAAPPARPS WRALAGLTLA VALAHVLLLD LAPTAIGPDP SPLANKFITR
TIVIAPPAAE KPAAPAAAAP VAEAKPPPPA KPRRPREPSR PRPVAPPPPE PVPQPAPQVS
EQPPAPPAQT PDLTAQNATD SGATPPDQAA SAPAGAMLGG AGSTANAGVG NGPPGEAAGA
ASAAAGNVVG PEALRIPGSV KLAFAVTGQQ GASPMQGVFG DLVWLQDGSS YDARLSLKFL
FRTIRSQHST GRIGPTGIEP ARFSESRKGE VASHFLRDQG QIMFSNNAPS VPLLPGAQDR
LSVVMQLGGM LAGDPGRYPA GSRISIQTAG PRDAGVWVFN IEGEEQMSVP AGDYAVRKLT
RSPRREFDDK IEIWLAPALG YLPVRMKQTQ PNGDFADMQL RESLPAGPAS R
|
|---|
| |