| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4776 |
|---|
| Symbol | |
|---|
| ID | 7970246 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5088545 |
|---|
| End bp | 5089750 |
|---|
| Gene Length | 1206 bp |
|---|
| Protein Length | 401 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 644795371 |
|---|
| Product | GumN family protein |
|---|
| Protein accession | YP_002946647 |
|---|
| Protein GI | 239817737 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3735] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | TTGCGGATAC TCCGGATCCT GGTTGCGCCG AGGCGCGACA CCCTTTTGAA GACGAAGACG
CCCGCGCGTG CGTCCCTGCT TTCGCGCCTG CCGCGCCTTG CGCTGGCCGG CGCCTGCTGC
GTCTTCGCGC TGGCGGCGCA GGCCGCCTGC CCGCCGTCTG CCATTGCCAG CCTCGGAAAG
CCCGGCGCGG CCGTCGGCCA GTGGAACGCG GCCGACCGCG GCCTGCTGTG GCGCGCCGAG
CGAGACGGGC GCACTTCCTG GCTCTACGGG ACCATTCATC TCGGGCGCGC CGAGTGGGTG
CGGCCCGGGC CCACCGTGCA GAAGGCGCTG GAGCAAAGCG ACGCGCTGGC ACTGGAACTC
GACGTGCGCG ACCCGGTCGC GATGCAGCCC CTGACGCAGC AGGCCGATCC GGCCGTGGTC
GCGCGGCTGC TCAGTGGCGA GCGCGCACAG CGGCTGGCGC GCCAGAACGA GGCCGCCTGC
GTGCCGCCCG GCCAGGCCAC GGGGCTGCAG CCCATCCTGC AGGTCATGGC CCTGACCGGC
CTGGTGGCGC GCGCCGACGG CCTGTACCCC GAGTTCGGCG CCGACGAGGC GCTGGCCGTC
TCCGCACGCA ACAACAACAA GCCGGTGTTC GCGCTCGAAA GCGCGGCCGC GCAATTGAAG
ATGCTGACCG GCGACTCCGA GGCCGAGGAG GCCGAGCAGA TCGACGCCGC CCTGAGCGAA
CTGGAATCGG GCCAGTTGCG CGCGCAGATG AAGGAGTTGG CCGACATCTG GGCACGCGGC
GACGCGGACA AGCTCGGCCG CTACCCCGAG TGGTGCAACT GCCTCAACAC GCCCGCCGAG
CAGCGGCTCA TGAAGCGCCT GCTGGACGAC CGCAACCCGG GCCTGGCCGA CGGCATCGAG
CGCATGCACG CGGGCGGCAA GCGCGTGTTT GCTGCCGTGG GCGCGCTGCA CATGGTCGGT
CCGCAGGGGC TGCCGGCGCT GCTGGCGGCG CGCGGCTTCA AGGTGGAGGC GGTCCCGCTG
GTGGCGCAGC CGCCCGCCGC GGTGCCGACC GCACCCGCGC CCAAGGCGAG CGCCCGCGGC
GCGCAAGGGG CCAGGAGCAA TCGCGGCGCC AAGGCTTCCG GCGCCAAGGC CTCGGGCACC
CGGAGTTCGG GCAATGCCAA GTCCGCCCAG CGCGCACCGG CACCAAAGAA CAAACAGCGC
CGATAA
|
|---|
| Protein sequence | MRILRILVAP RRDTLLKTKT PARASLLSRL PRLALAGACC VFALAAQAAC PPSAIASLGK
PGAAVGQWNA ADRGLLWRAE RDGRTSWLYG TIHLGRAEWV RPGPTVQKAL EQSDALALEL
DVRDPVAMQP LTQQADPAVV ARLLSGERAQ RLARQNEAAC VPPGQATGLQ PILQVMALTG
LVARADGLYP EFGADEALAV SARNNNKPVF ALESAAAQLK MLTGDSEAEE AEQIDAALSE
LESGQLRAQM KELADIWARG DADKLGRYPE WCNCLNTPAE QRLMKRLLDD RNPGLADGIE
RMHAGGKRVF AAVGALHMVG PQGLPALLAA RGFKVEAVPL VAQPPAAVPT APAPKASARG
AQGARSNRGA KASGAKASGT RSSGNAKSAQ RAPAPKNKQR R
|
|---|
| |