| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4769 |
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| Symbol | |
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| ID | 7971779 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 5066737 |
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| End bp | 5068428 |
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| Gene Length | 1692 bp |
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| Protein Length | 563 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 644795354 |
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| Product | AMP-dependent synthetase and ligase |
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| Protein accession | YP_002946640 |
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| Protein GI | 239817730 |
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| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGACAT CCGCGCGACA GAACTATCCG GCCGGCGTGC CGCACGAGAT CGACCCCGGG
CAGTACCGGT CCCTGCCCCA CATGTTCGAC GAGGCCTTCG CCCGCTATGC CGATCGGCCG
TTCTCGGTTT GCATGGAGCG CTGGATGTCG TATGGCGAGC TCGACACGCT GTCGAAGGCC
CTGGGCGCGT GGCTGCAATC GCTGGGCCTC GAGCCCGGCG CGCGGGTCGC CATCATGCTG
CCCAACGTGC CCCAGTTCGC GGTCACGATG TGCGGCGTGC TGCGCGCCGG CTACACCTGC
GTCAACGTCA ATCCGCTCTA CACGGCGCGC GAGCTCGAGC ACCAGCTCAA GGATTCGGGC
GCCACGGCCA TCGTCATCCT CGAGAACTTC GCCGCGACGC TGGAACAGGT GATCGAGCGC
ACGCCCGTGA AGCACGTGGT CATCACTTCG ATGGGCGACC TGCTCGGCGG ACTCTATGGC
GCCTGGATCA CGGTGGCGGT CCGCCACCTG GCGAAGATGG TTCCGCCGTA CAAGCTGCCG
CTGGGCAACG GCCGCAGCGT CACGCCGTTT TCCAAGGTCA TCGAAGAAGG GCGCGGGCGC
GCGCTGGCGC CGGACCAGAG CACGCTCGAT TCGATCGCGT TCCTGCAATA CACCGGCGGC
ACCACGGGTT TGTCCAAGGG CGCGGTGCTG ACCCACCGCA ACATCGTCGC GGCCACGCTG
CAGGCGGAGG CCTGGTTCAC GCCGGCGCTG TCGCGGGCGG GCGACCTGGC CAAGGTCAAC
AGCATCGCGG CGCTGCCGCT CTATCACATC TTCGCGCTCA CGCTTTGCCT CCTGGTCATC
CGCCAGGGCT CGCACATGAC GCTGATTCCC AATCCGCGCG ATTTCGGCAA GTTCATTGCG
GTGCTCAAGA AGCGGCCCTT CCACATGCTG CCGGCGGTGA ACACGCTCTT CAATGCGCTC
TTGATGCACC CCGGGTTCAA GTCGATCGAT TTCTCCACGC TGTTCGTTTC GCAGGCGGGC
GGAATGGCCG CCTCCGAAGG CACGGCACGG CGCTGGTTCG AGGCCACCGG CTGCCCGATG
ATCGAAGGCT GGGGCATGAG CGAGACCTGC GCGATCGGCA CCAACAACCC GGTGTCGAAC
ACCAGCTTCA CCGGCACCAT CGGCTTGCCG CTGCCCAGCA TCGAGATCGC CATCAAGGAC
GACGAAGGCA ACTCCCTGCC CGTCGGCACG CCGGGCGAGC TCTGCATCAA GGGGCCCAAC
GTCATGACCG GCTACTACAA CCAGCCCGCC GAGACCGCCG CTGCCTTCAC GCCCGATGGC
TTCATGCGCA CCGGCGACAT CGCCGTCATG CAAGAGGATG GTTACAGCCG CATCGTCGAC
CGCAAGAAGG ACATGATCCT GGTGAGCGGC TTCAACGTCT TTCCGAACGA ACTGGAGAAC
GTCATTTCGC TGTGTCCCGG CGTCGTCGAG TGCGCGGCTG TCGGTGTGCC CGACGAAAAG
CAGGGCGAGG CGATCAAGGT TTTTGTCGTG CGCAAGGATG CGGCGCTCAC CGAGGAAGCC
GTGCTGCAAT ACTGCAATGG ACAGCTCACC GGCTACAAGC GGCCCAAGCA CATCGAATTC
CGCGACTCGC TGCCGAAGAC CAATGTCGGG AAGATCCTGC GGCGCGAGTT GCGCACCAGC
GCGGGCGCCT GA
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| Protein sequence | MQTSARQNYP AGVPHEIDPG QYRSLPHMFD EAFARYADRP FSVCMERWMS YGELDTLSKA
LGAWLQSLGL EPGARVAIML PNVPQFAVTM CGVLRAGYTC VNVNPLYTAR ELEHQLKDSG
ATAIVILENF AATLEQVIER TPVKHVVITS MGDLLGGLYG AWITVAVRHL AKMVPPYKLP
LGNGRSVTPF SKVIEEGRGR ALAPDQSTLD SIAFLQYTGG TTGLSKGAVL THRNIVAATL
QAEAWFTPAL SRAGDLAKVN SIAALPLYHI FALTLCLLVI RQGSHMTLIP NPRDFGKFIA
VLKKRPFHML PAVNTLFNAL LMHPGFKSID FSTLFVSQAG GMAASEGTAR RWFEATGCPM
IEGWGMSETC AIGTNNPVSN TSFTGTIGLP LPSIEIAIKD DEGNSLPVGT PGELCIKGPN
VMTGYYNQPA ETAAAFTPDG FMRTGDIAVM QEDGYSRIVD RKKDMILVSG FNVFPNELEN
VISLCPGVVE CAAVGVPDEK QGEAIKVFVV RKDAALTEEA VLQYCNGQLT GYKRPKHIEF
RDSLPKTNVG KILRRELRTS AGA
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