| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4765 |
|---|
| Symbol | |
|---|
| ID | 7971775 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 5063113 |
|---|
| End bp | 5063586 |
|---|
| Gene Length | 474 bp |
|---|
| Protein Length | 157 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 644795350 |
|---|
| Product | transcriptional regulator, AsnC family |
|---|
| Protein accession | YP_002946636 |
|---|
| Protein GI | 239817726 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1522] Transcriptional regulators |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 11 |
|---|
| Plasmid unclonability p-value | 0.261527 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGCAT TAGACAAGAT CGACAGGCTC ATTCTGCGCA CGCTGCAAGC AGACGGGCGC
GCCACCTACG ACCAGATCGC CGAGCAGGTC AGCCTTTCCC CGAGCGCCGT GCTGCGGCGC
GTCAAGCGGC TGGAGGAAAG CGGCGTCATC GACCGCTACG TCGCGCTTGT GCGCCCCGAA
GTCATTGGCC TGGGGCTGAC CGCCTACCTC AATGTGCGCC TCGAAAAGCA CACCGAAACC
CACAAGCGCA ACCCCATGGA CCTGTTCCGC GCCAGCGTCC AGACCTGGCC CGAAGTGGTC
GAGTGCGCGG CGCTCACCGG CGAGATGGAC TACCTGCTGC GCGTGGTGGT CGCCGACATG
GGGCATTACA GCCGTTTCAT CATGGACACC CTGCTCAAGC ACCCCAGCGT GGAGGATTGC
AAGACCAGCT TCGTGCTCGA CCGTGTCAAG GCCACAACAG CCGTGCCGGT TTAG
|
|---|
| Protein sequence | MEALDKIDRL ILRTLQADGR ATYDQIAEQV SLSPSAVLRR VKRLEESGVI DRYVALVRPE
VIGLGLTAYL NVRLEKHTET HKRNPMDLFR ASVQTWPEVV ECAALTGEMD YLLRVVVADM
GHYSRFIMDT LLKHPSVEDC KTSFVLDRVK ATTAVPV
|
|---|
| |