Gene Vapar_4749 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4749 
Symbol 
ID7971759 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp5047714 
End bp5048397 
Gene Length684 bp 
Protein Length227 aa 
Translation table11 
GC content69% 
IMG OID644795334 
Producttranscriptional regulator, TetR family 
Protein accessionYP_002946620 
Protein GI239817710 
COG category[K] Transcription 
COG ID[COG1309] Transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones12 
Plasmid unclonability p-value0.515185 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACGCCG ATCCCGCCGC CCTGTCCCCC AGCACCGCCC AGGAAATGCC CGCCCCCGAC 
GGCCCGCTGT CGCGCGCGCG GCCGGGGCGC GAACGCATCA TGGCGGCGAT CCGCACCGCG 
GCCGTGGCCG AGTTCAGCCT GCATGGCCTC AAGGGCACCT CCACCCAGGC CATTGCCGCA 
CGCGCCGGCC TCACCAAGCC CCAACTGCAC TACTACATCG CCGGCAAGGA AGAGCTCTAC 
GAAGAGCTGC TGATGCAGGT GCTGCATGCC TGGAAGGTGG TGTTCTCGTT CGAGGACGCC 
AGCGACCCGG CCACCGTGCT GGGCGACTAC ATCCGCAAGA AGCTCGACCA CGCGTTCGAC 
AACCCCGAGA TCTCGCGCAT CTTCACGCGC GAAGTGCTCG ACGGCGGCCG CAACCTCGAC 
CGCTACTGGC CCAACGCGCA GGCCTGGACG CAGAAGAAGG TCGACATCAT CAACGGCTGG 
ATCGCGCGCG GGCAGATGCG TCCGCTCGAT GCGCGCCTGC TCCTGATGCA CATCTGGGCC 
ATGACCCAGA GCTACGCCGA CTACGCGATC CAGACGCGCG TGATGCTCGG CCTGCCGCCC 
GATGCGCCGA TCGACCGCGA GCCGATCGCG CGCGAGCTGG TGGCCTTCGT GCTGGGCGGC 
TGCGGCATCG GCAGCCAAGC CTAG
 
Protein sequence
MNADPAALSP STAQEMPAPD GPLSRARPGR ERIMAAIRTA AVAEFSLHGL KGTSTQAIAA 
RAGLTKPQLH YYIAGKEELY EELLMQVLHA WKVVFSFEDA SDPATVLGDY IRKKLDHAFD 
NPEISRIFTR EVLDGGRNLD RYWPNAQAWT QKKVDIINGW IARGQMRPLD ARLLLMHIWA 
MTQSYADYAI QTRVMLGLPP DAPIDREPIA RELVAFVLGG CGIGSQA