| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4739 |
|---|
| Symbol | |
|---|
| ID | 7971749 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | + |
|---|
| Start bp | 5036702 |
|---|
| End bp | 5037472 |
|---|
| Gene Length | 771 bp |
|---|
| Protein Length | 256 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644795324 |
|---|
| Product | short-chain dehydrogenase/reductase SDR |
|---|
| Protein accession | YP_002946610 |
|---|
| Protein GI | 239817700 |
|---|
| COG category | [I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism
[R] General function prediction only |
|---|
| COG ID | [COG1028] Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACACCA CCCAACTCTT CTCGCTGAAG GGCCGCAGCG CCTTGATCAC CGGCGGCTCG
CGCGGCATCG GCCGCATGAT TGCCGAGGGC TTCCTGGCCC AGGGCGCGCG CGTGTACATC
TCCGCCCGCA AGGCCGCGGC CTGCGACCAG GCCGCCAAGG AGCTTTCGGC CTTCGGCCAT
TGCGTGTCGC TGCCGGCCGA CGTGTCCACG CTGGAAGGCG CGCAGGCGCT GGTCGCTGCC
TATGCGAAGC ATGAAGACGC GCTCGACATT TTGGTCAACA ACGCGGGCGC GGCCTGGGGT
GCGCCGTACG ACGAATTTCC CGAGAGCGGC TGGGACAAGG TGGTGGACCT GAACCTGAAG
ACGCCCTTCT TCCTGACCCA GGCGCTGACG CCGATGCTCA AGAAGGCGGC GACCGACCAC
CTCGCGAAGG TGATCAACAT TGCGTCCATC GACGGCATCT CGGTGAATCC GCAGGAGACG
TACTCCTATG CCGCAAGCAA GGCCGGCCTG ATCCAGCTCA CGCGGCGCAT GGCGCTGCGG
CTCGCGCAGG AGCGGATCGT GGTGAGCGCG ATCGCGCCCG GAGCGTTTGC CTCGGACATG
AACAAGCTCG CGCGCGACCA TGGCGATGAA GTGAAGGAGC GGATTCCCGC GGGGCGCATC
GGGGTGCCGG AGGACATGGC GGGTGCGGCT ATTTATCTCG CCTCCCGGGC GGGGGACTAT
GTGATGGGGT CTACGCTGGT GGTGGATGGG GGGGTTACGC ACGCGCGGTG A
|
|---|
| Protein sequence | MDTTQLFSLK GRSALITGGS RGIGRMIAEG FLAQGARVYI SARKAAACDQ AAKELSAFGH
CVSLPADVST LEGAQALVAA YAKHEDALDI LVNNAGAAWG APYDEFPESG WDKVVDLNLK
TPFFLTQALT PMLKKAATDH LAKVINIASI DGISVNPQET YSYAASKAGL IQLTRRMALR
LAQERIVVSA IAPGAFASDM NKLARDHGDE VKERIPAGRI GVPEDMAGAA IYLASRAGDY
VMGSTLVVDG GVTHAR
|
|---|
| |