Gene Vapar_4736 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4736 
Symbol 
ID7971746 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5033327 
End bp5034406 
Gene Length1080 bp 
Protein Length359 aa 
Translation table11 
GC content69% 
IMG OID644795321 
Productcyclic nucleotide-binding protein 
Protein accessionYP_002946607 
Protein GI239817697 
COG category[R] General function prediction only 
COG ID[COG0491] Zn-dependent hydrolases, including glyoxylases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAACCTCC TCGAACGCGA ACTCCACTAC CCCCTGGGCG ACACCCTGCC CGCCCCCGGC 
GAAGCACTGG AAGTCGCGCC GGGCGTGCGA TGGATCCGCA TGCGGCTGCC GTTCGCGCTC
GATCACATCA ACCTCTGGCT GCTGCGCGAC AACCTCGATG GCGTCGAGGG CTGGACCGTG
GTCGATTGCT GCATCGCGCA CGACGAAGCC CGCGCCCAGT GGGAGCAGGT GTTCGAGACG
CAGCTGCAGG GCCTGCCGAT CCTGCGCGTG ATCGTCACCC ACATGCACCC CGACCACATC
GGCCTGGCCG AGTGGCTGTG CACGCGCTGG AACGCGCCGC TGTGGATCAG CTCGACCGAC
TACCACGTGG CGCGCGTGCT GAGCACCGCT GGCGACACGC TGGCGGGCGG CGACGCGGCG
GCGAGCTTCT TTGCCTCGCA CGGCCTCGTC GACCCCGAGG CGGTGGCCAA GATCCGCGCG
CGCACCAACT ACTACGCCAA CATGGTGCCC TCCGTGCCCG ACCGCTTCAC GCGCATGATG
GACGGCGACA CCGTGGCCAT CAACGGCCAC GCCTGGCGCT GCATCAGCGG CTACGGCCAT
GCGCCCGAGC ACATCGCGCT GTACTGCGAC GATCTCAAGC TGCTGCTGGG CGGCGACATG
ATGCTGCCGC GCATCTCGAC CAACGTGAGC GTGCATGCAG GCGAGCCCGA AGCCAATTCG
CTGCGGCTCT TCCTGGACAG CATCGACAAG TTCAAGGCGC TGCCGGCCGA CACGCTGGGC
CTGCCCTCGC ACGGCAAGCC GTTCACGGGC ATTCACCGCC GCGTCGACCA GCTGCAGGAG
CACCACCGCG ACCGCCTGGC CGAACTGCTC GAAGCCTGCA CCGCGCGCCC GCTGACCGCG
GCCGAGGGCC TGCCGATCCT GTTCAAGCGC GAACTCGATC TGCACCAGAT GACCTTCGCC
ATGGGCGAGA CCGTGGCGCA CCTGCACCTG CTGTGGTTCG CGGGCCAGGT CCGGCGCGAG
CTCGGCGAGG ACGGCATCTA CCGATTCGAA CCCCGCAGCG CCACGGCCCG GGCACTTTAG
 
Protein sequence
MNLLERELHY PLGDTLPAPG EALEVAPGVR WIRMRLPFAL DHINLWLLRD NLDGVEGWTV 
VDCCIAHDEA RAQWEQVFET QLQGLPILRV IVTHMHPDHI GLAEWLCTRW NAPLWISSTD
YHVARVLSTA GDTLAGGDAA ASFFASHGLV DPEAVAKIRA RTNYYANMVP SVPDRFTRMM
DGDTVAINGH AWRCISGYGH APEHIALYCD DLKLLLGGDM MLPRISTNVS VHAGEPEANS
LRLFLDSIDK FKALPADTLG LPSHGKPFTG IHRRVDQLQE HHRDRLAELL EACTARPLTA
AEGLPILFKR ELDLHQMTFA MGETVAHLHL LWFAGQVRRE LGEDGIYRFE PRSATARAL