Gene Vapar_4727 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4727 
Symbol 
ID7971737 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp5023060 
End bp5023752 
Gene Length693 bp 
Protein Length230 aa 
Translation table11 
GC content68% 
IMG OID644795312 
ProductHAD-superfamily hydrolase, subfamily IA, variant 3 
Protein accessionYP_002946598 
Protein GI239817688 
COG category[R] General function prediction only 
COG ID[COG0637] Predicted phosphatase/phosphohexomutase 
TIGRFAM ID[TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED
[TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGACCCCAT TCCCCTTCGA TGCCGTCCTT TTCGACTGCG ACGGCGTCCT CGTCGATTCC 
GAACCCATCA CCAACCGCGT GCTCGCCGAG ATGCTCGGCG AACTCGGCTG GCACCTCACC
ACCGAAGAGT CGATGAACAC CTTCACCGGC AAGGCCGTGA AGGACGAAAC CGCGCTCATC
GAATCGAAGA CCGGCGTCAG GATCACCGAA GACTGGCTCA AGGCCTTCAG GGCCCGCCGC
AACGAAGCCC TCGAGCGCGA CCTCGTGGCC ATTGCGCACG CCCCCGCGGC CATTCGCGAA
ATTCATGCGC GGCTCCGGGG CCGCATCGCC TGCGCCTCGG GCGCCGACCG CCACAAGGTC
GAGCTGCAAC TGGCGAAGGT CGGTCTGCTC GAGTGTTTCG AAGGCCGCAT CTTCAGCGGC
CACGAGATGC CGCGCTCCAA GCCCTACCCC GACGTTTATC TGGCTGCTGC CGAGGCGCTG
GGTGTCGATC CGAAGCGCTG CGCGGTGGTC GAGGACACCG TCACGGGCGC GATGGCCGGC
GTGGCTGCGG GTGCCACGGT GTTCGGCTAC AGCACCGGCG AATCGGGCCA CAGCGGCCCC
GAGGCGCTGC GCAGCGTCGG CGCACTGCAG GTGTTCAGCG ACATGCGGGA ACTGCCCGCG
CTGCTCGCTT CGCACGGCCT GCAGCCGGCC TGA
 
Protein sequence
MTPFPFDAVL FDCDGVLVDS EPITNRVLAE MLGELGWHLT TEESMNTFTG KAVKDETALI 
ESKTGVRITE DWLKAFRARR NEALERDLVA IAHAPAAIRE IHARLRGRIA CASGADRHKV
ELQLAKVGLL ECFEGRIFSG HEMPRSKPYP DVYLAAAEAL GVDPKRCAVV EDTVTGAMAG
VAAGATVFGY STGESGHSGP EALRSVGALQ VFSDMRELPA LLASHGLQPA