Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4727 |
Symbol | |
ID | 7971737 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5023060 |
End bp | 5023752 |
Gene Length | 693 bp |
Protein Length | 230 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 644795312 |
Product | HAD-superfamily hydrolase, subfamily IA, variant 3 |
Protein accession | YP_002946598 |
Protein GI | 239817688 |
COG category | [R] General function prediction only |
COG ID | [COG0637] Predicted phosphatase/phosphohexomutase |
TIGRFAM ID | [TIGR01509] haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED [TIGR01549] haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCCAT TCCCCTTCGA TGCCGTCCTT TTCGACTGCG ACGGCGTCCT CGTCGATTCC GAACCCATCA CCAACCGCGT GCTCGCCGAG ATGCTCGGCG AACTCGGCTG GCACCTCACC ACCGAAGAGT CGATGAACAC CTTCACCGGC AAGGCCGTGA AGGACGAAAC CGCGCTCATC GAATCGAAGA CCGGCGTCAG GATCACCGAA GACTGGCTCA AGGCCTTCAG GGCCCGCCGC AACGAAGCCC TCGAGCGCGA CCTCGTGGCC ATTGCGCACG CCCCCGCGGC CATTCGCGAA ATTCATGCGC GGCTCCGGGG CCGCATCGCC TGCGCCTCGG GCGCCGACCG CCACAAGGTC GAGCTGCAAC TGGCGAAGGT CGGTCTGCTC GAGTGTTTCG AAGGCCGCAT CTTCAGCGGC CACGAGATGC CGCGCTCCAA GCCCTACCCC GACGTTTATC TGGCTGCTGC CGAGGCGCTG GGTGTCGATC CGAAGCGCTG CGCGGTGGTC GAGGACACCG TCACGGGCGC GATGGCCGGC GTGGCTGCGG GTGCCACGGT GTTCGGCTAC AGCACCGGCG AATCGGGCCA CAGCGGCCCC GAGGCGCTGC GCAGCGTCGG CGCACTGCAG GTGTTCAGCG ACATGCGGGA ACTGCCCGCG CTGCTCGCTT CGCACGGCCT GCAGCCGGCC TGA
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Protein sequence | MTPFPFDAVL FDCDGVLVDS EPITNRVLAE MLGELGWHLT TEESMNTFTG KAVKDETALI ESKTGVRITE DWLKAFRARR NEALERDLVA IAHAPAAIRE IHARLRGRIA CASGADRHKV ELQLAKVGLL ECFEGRIFSG HEMPRSKPYP DVYLAAAEAL GVDPKRCAVV EDTVTGAMAG VAAGATVFGY STGESGHSGP EALRSVGALQ VFSDMRELPA LLASHGLQPA
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