Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4723 |
Symbol | |
ID | 7971733 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 5018145 |
End bp | 5019827 |
Gene Length | 1683 bp |
Protein Length | 560 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644795308 |
Product | AMP-binding domain protein |
Protein accession | YP_002946594 |
Protein GI | 239817684 |
COG category | [I] Lipid transport and metabolism [Q] Secondary metabolites biosynthesis, transport and catabolism |
COG ID | [COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 11 |
Plasmid unclonability p-value | 0.712671 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGAACATGA CTGCTGCGCT GGACAAGAGC TACGCCAAGG GCGCCACCAA CGTCCCCCTC ATCGAACAAA CCATCGGCGA CTTCTTCGAC GGCATGGCCG CGAAGCAGCC CGACCGCGAG GCGCTCGTCA GCCGCCACGA AGGCAAGCGC TTCACCTACC GCGAGCTGCG GGCCGAGTCC AACAAGCTGG CCAGCGCATT GCTGAAGCTG GGGCTCGCAC CCGGCGACCG CGTGGGCATC TGGTCGCACA ACAACGCGCC CTGGGTGCTG ATGCAGATCG CGACCGCCAA GGCCGGGCTG ATCCTCGTCA ACATCAACCC GGCCTACCGC ACCTCCGAGC TCGAATACGC GCTCAACAAG GTCGGCTGCA AGGCGCTGGT GACGATGGCG CAGTTCAAGA CCAGCGACTA CCTGGGCATG CTGCGCGAGC TCGGCCCCCA GCGCCTGCCG CAGCTGCGCC ACACCTTCTG GATCGACGGC AAGGCCGCGG CCGATGTGCA GGAGCCCGGC ATGCAGCGCT TCAGCGAGCT GCTCGCAAGC GGCGATGCGG CCGACCCGCG CGTGGCCGCC ACGCAAAAGA CGCTCAAGGC CACCGACCCG ATCAACATCC AGTTCACCAG CGGCACCACG GGCTTTCCCA AGGGCGCGAC GCTCACGCAC CGCAACATCC TCAACAACGG CTTCTTCATC GGCGAATGCA TGAAGCTCAC GCCGGCCGAC AGGCTGTGCA TTCCGGTGCC GCTCTACCAC TGCTTCGGCA TGGTGCTCGG CAACCTGGCC TGCCTCACGC ATGGCTCGGC CATCGTGTAT CCGAACGACG GCTTCGATCC GCTCACGGTG CTCGAGACTG TGCAGGCCGA AAAATGCACC GGCCTGCACG GCGTGCCCAC CATGTTCATC GCCGAGCTCG ACCATCCACG CTTCAAGGAG TTCGACCTGT CCACGCTGCG CACCGGCATC ATGGCCGGCT CGCCGTGCCC GACCGAGGTG ATGAAGCGCG TGGTGAACGA GATGCACCTG GGCGAAATCA CCATCGCCTA CGGCATGACC GAGACCAGCC CCGTGAGCTG CCAGAGCAGC ACCGACACGC CGCTGGACAA GCGTGTGTCC ACCGTGGGCA CGGTGCAGCC GCACCTGGAG ATCAAGATCA TCGACCCCGA GACCGGGGCC ATCGTGCCGC GCGGCAGCTC CGGCGAGTTC TGCACGCGCG GCTACTCGGT GATGCACGGC TACTGGGAAG ACGAGCCCAA GACCCGCGAA GCCATCGATA CCGAGCACTG GATGCACACC GGCGACCTGG CCACCATGGA CGCCGAGGGC TACGTGAATA TCGTCGGCCG CATCAAGGAC CTCGTGATCC GCGGCGGCGA GAACATCTAC CCGCGCGAGA TCGAGGAATT CCTGTACCGC CACCCGAAGG TGCAGGACGT GCAGGTGGTC GGCCTGCCCG ACCGGAAGTA CGGCGAGGAG CTGTGCGCCT GGATCATCGC CAAGCCCGGC CAGGCCGCGA CCGAAGACGA GATCCGCGAC TTCTGCAAGG GCCAGATCGC GCACTACAAG GTGCCGAAGT ACATCCGCTT CGTCACCGAG TTTCCGATGA CGGTGACCGG CAAGATCCAG AAATTCAAGA TCCGCGAAGC GATGGCCGAG CAGCTCGGCC TCGAACAAGA AAAGACAGCA TGA
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Protein sequence | MNMTAALDKS YAKGATNVPL IEQTIGDFFD GMAAKQPDRE ALVSRHEGKR FTYRELRAES NKLASALLKL GLAPGDRVGI WSHNNAPWVL MQIATAKAGL ILVNINPAYR TSELEYALNK VGCKALVTMA QFKTSDYLGM LRELGPQRLP QLRHTFWIDG KAAADVQEPG MQRFSELLAS GDAADPRVAA TQKTLKATDP INIQFTSGTT GFPKGATLTH RNILNNGFFI GECMKLTPAD RLCIPVPLYH CFGMVLGNLA CLTHGSAIVY PNDGFDPLTV LETVQAEKCT GLHGVPTMFI AELDHPRFKE FDLSTLRTGI MAGSPCPTEV MKRVVNEMHL GEITIAYGMT ETSPVSCQSS TDTPLDKRVS TVGTVQPHLE IKIIDPETGA IVPRGSSGEF CTRGYSVMHG YWEDEPKTRE AIDTEHWMHT GDLATMDAEG YVNIVGRIKD LVIRGGENIY PREIEEFLYR HPKVQDVQVV GLPDRKYGEE LCAWIIAKPG QAATEDEIRD FCKGQIAHYK VPKYIRFVTE FPMTVTGKIQ KFKIREAMAE QLGLEQEKTA
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