| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4706 |
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| Symbol | |
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| ID | 7971716 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 5001939 |
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| End bp | 5003633 |
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| Gene Length | 1695 bp |
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| Protein Length | 564 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644795291 |
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| Product | General substrate transporter |
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| Protein accession | YP_002946577 |
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| Protein GI | 239817667 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG2814] Arabinose efflux permease |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCAGCAA CACTGGATTC GAGGGGGATG CCGCATCCGG CCCCCCGGCC CATGTCCGCG
GAGGAAAAGA AGGTCATCTT CGCTTCCTCC CTTGGCACGG TGTTCGAGTG GTACGACTTC
TACCTTTACG GCTCGCTGGC CGCGATCATC GCGAAGCAGT TCTTCAGCGG CCTCGATGCC
GGCGCGGCCT TCATCTTCGC GCTGCTGGCC TTTGCCGCGG GCTTCCTGGT GCGGCCGTTC
GGCGCCATCG TGTTCGGCCG GCTCGGCGAC ATGATCGGGC GCAAGTACAC CTTCCTGGTC
ACGATCCTGA TCATGGGCCT GTCGACCTTC ATCGTCGGCC TGTTGCCCAG CTACGCGACC
ATCGGCGTCG CGGCGCCGGT GATCCTGATC GCGCTGCGCA TGCTGCAGGG CCTCGCGCTC
GGCGGCGAGT ACGGCGGTGC CGCCACCTAT GTGGCCGAGC ATTCGCCGCA CGGCAAGCGC
GGTGCCTACA CCTCGTGGAT CCAGACCACC GCCACGCTCG GGCTGTTCCT GAGCCTGCTG
GTGATCCTGG GCGTGCGCGA ATGGCTGGGC GAAGCGGTGT TCAACGACTG GGGCTGGCGC
ATTCCGTTCC TGGTGTCGAT CCTGCTGCTG GGCGTCTCGG TGTGGATCCG CCTGTCGCTG
AGCGAATCGC CCGCCTTCCA GAAGATGAAG GCCGAGGGCA AGACCTCGAA GGCGCCGCTG
TCCGAGTCCT TCGGCCAGTG GAAGAACCTC AAGATCGTGA TCCTGGCGCT GGTCGGCCTC
ACGGCGGGCC AGGCGGTGGT CTGGTATTCG GGCCAGTTCT ACGCGCTCTT CTTCCTGACG
GCGCAGCTCA AGGTCGACGC GACCACGGCC AACCTGATGA TCGCGGCCGC GCTTTTGATC
GGCACGCCGT TCTTCGTGGT GTTCGGCACG CTGTCGGACA AGATCGGCCG CAAGCCGATC
ATCATGGCCG GCTGCCTGCT GGCCGTGGTC ACCTACTTCC CGGTCTTCAA GATGCTGACC
GAGGCCGCCA ACCCCGACCT CGCCAAGGCG CAGGCCACCG CCGGCGTCAC CGTCACGGCC
GACCCCGCCA CCTGCTCGTT CCAGGGCAAC CCGGTGGCGC GCGAGATCGA CTTCAGGAGC
TCCTGCGACA TCGCCAAGCG CTACCTCGTG CAGAACTCGG TGAGCTATGA GAACGTGGCC
GGCGCGCCGG GTTCGAAGGC GGTCGTGAAG ATCGGCGACA AGTCGGTCGA GGCGCCCGTG
GGCAACGTCG TGAACCTCAA GTTCGACGAG ACCTCCGCCA AGGAGATCGC CGCCTTCAAG
AAGGGCGTGG CCGAAGACCT GAAGGTCGCG GGCTACCCGG CCAAGGCCGA CCCCGCCAAG
ATCAACAAGC CGCTGACGGT CGCGCTGCTG TTCTGGCTGG TGCTGCTGGT GACCATGGTC
TACGGCCCGA TCGCCGCCAT GCTGGTGGAG CTGTTCCCCA CCCGCATCCG CTACACCTCG
ATGAGCCTGC CCTACCACAT CGGCAACGGC TGGTTCGGCG GCCTGCTGCC GACCACTGCC
TTTGCCATCG TGGCCTCGAC CGGCAACATG TACAACGGCC TGTGGTATCC GATCATCATC
GCGGGCGTCA CGCTGGTGGT GGGCACCCTG TTCATCCGCG AAACCAAGAA CGTCGACATC
TACGCGAACG ACTGA
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| Protein sequence | MAATLDSRGM PHPAPRPMSA EEKKVIFASS LGTVFEWYDF YLYGSLAAII AKQFFSGLDA
GAAFIFALLA FAAGFLVRPF GAIVFGRLGD MIGRKYTFLV TILIMGLSTF IVGLLPSYAT
IGVAAPVILI ALRMLQGLAL GGEYGGAATY VAEHSPHGKR GAYTSWIQTT ATLGLFLSLL
VILGVREWLG EAVFNDWGWR IPFLVSILLL GVSVWIRLSL SESPAFQKMK AEGKTSKAPL
SESFGQWKNL KIVILALVGL TAGQAVVWYS GQFYALFFLT AQLKVDATTA NLMIAAALLI
GTPFFVVFGT LSDKIGRKPI IMAGCLLAVV TYFPVFKMLT EAANPDLAKA QATAGVTVTA
DPATCSFQGN PVAREIDFRS SCDIAKRYLV QNSVSYENVA GAPGSKAVVK IGDKSVEAPV
GNVVNLKFDE TSAKEIAAFK KGVAEDLKVA GYPAKADPAK INKPLTVALL FWLVLLVTMV
YGPIAAMLVE LFPTRIRYTS MSLPYHIGNG WFGGLLPTTA FAIVASTGNM YNGLWYPIII
AGVTLVVGTL FIRETKNVDI YAND
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