| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4686 |
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| Symbol | prfC |
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| ID | 7972897 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4974267 |
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| End bp | 4975895 |
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| Gene Length | 1629 bp |
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| Protein Length | 542 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795271 |
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| Product | peptide chain release factor 3 |
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| Protein accession | YP_002946557 |
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| Protein GI | 239817647 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG4108] Peptide chain release factor RF-3 |
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| TIGRFAM ID | [TIGR00231] small GTP-binding protein domain
[TIGR00503] peptide chain release factor 3 |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | TTGTCTTTTC TCTCCGAAAC CCGCCGCCGT CGCACCTTCG CGATCATTTC CCACCCCGAC
GCCGGCAAGA CCACGCTGAC CGAGAAGCTG CTGCTGTTCT CGGGCGCGAT CCAGATCGCC
GGTTCGGTGA AGGCGCGCAA GGCCTCGCGC CACGCCACCT CCGACTGGAT GGAGATCGAG
AAGCAGCGCG GCATTTCGGT GGCTTCGTCG GTCATGCAGA TGCTGTACCG CGACCACGTG
ATCAACCTGC TCGACACGCC CGGCCACAAG GACTTCTCGG AAGACACCTA CCGCGTGCTC
ACGGCGGTCG ACTCGGCCCT GATGGTGATC GACGCGGCCA ACGGCGTGGA GGCGCAGACG
CGCCGGCTGA TCGAGGTCTG CCGCCAGCGC GACACGCCCA TCATCACCTT CGTCAACAAG
ATGGACCGCG AAGTGCGCGA GCCGCTCGAC ATCCTCGACG AAGTGGAGCG CGAGCTTGGC
ATGCCGTGCG TGCCGATGAC CTGGCCGGTC GGCCAGGGCA AGAGCTTCCG CGGGATCATG
AACCTGCGCA CGCAGACGAT GACGGTGTTC GAGTCGGGCA GCGAGCGGCT GCCGCACGAC
TTCGAGACCA TCGCCCTCAC GGAGCGCGAC ACGCTCACCA AGCGCTTCGG CGCCGACTTC
GAATCCGCCA TGGACAGCAT GGAACTGGCC ACCGGCGCCT CGCCCACCTG GGACCGCGAA
GCCTTCCTGT CCGGCAAGCA GACGCCGGTG TTCTTCGGCT CCGGCGTGAA CAACTTCGGC
GTGATGGAGG TGCTCGACGC GCTGGTCGAC CTTGCGCCCT CCCCGCAGTC GCGCACCAGC
ACCACGATGG TCAACCGCCA GCCCGTGGTG AAGGAGATCC AGCCCGAGGA CCGGGACTTC
GCGGGCGTGG TGTTCAAGGT GCAGGCCAAC ATGGACGCCA ATCACCGCGA CCGCATCGCC
TTCGTGCGCA TGGCGTCGGG CAAGTACACG CCGGGCATGA AGCTCAAGGT GCAGCGCACG
TCGAAGGAAC TGCGGCCGAC CAGCGTCGTG ACCTTCATGA GCCAGCGCCG CGAGGCGGTC
GAGGAGGCCT ACGCCGGCGA CATCGTGGGC TTCACCACGC ACGGCGGCGT GCAGCTGGGC
GACACCATCA CCGACGGCGC GAGCCTGCAG TTCACCGGCC TGCCCTTCTT TGCACCCGAG
CTGTTCATGA CGGTGATCCT GAAGAACCCG CTGCGCACCA AGCAGCTGCA GCAGGGCCTG
GCCCAGCTCG GAGAGGAAGG CGCCATTCAA GTGTTCCGCC CCGAGATCGG CGGGCCGATG
CTGCTGGGCG CCGTCGGGCA GCTGCAGTTC GAGGTGGTGC AGCACCGCCT GAAGGCCGAG
TACGACGCCG ACGTGCGGCT CGAAGGCTGC CAGTACACCG GCGCACGCTG GATCACCGCC
GATTCGCCGG CCGAGCTGCG CGAGTTCGTC AACGCGTACC CGCAGCGCAT GGCCAAGGAC
GCGGCCGATA CGCTGGCCTT CCTGTGCACT TCGCCCTACG ACGTGCGGCT GGCGCAGGAG
CGCTTTCCGA AGATCCATTT CCATCCGCTG CGGGAGCACG CGGGGCTGGC GCTGCAGAAC
GCGGGCTGA
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| Protein sequence | MSFLSETRRR RTFAIISHPD AGKTTLTEKL LLFSGAIQIA GSVKARKASR HATSDWMEIE
KQRGISVASS VMQMLYRDHV INLLDTPGHK DFSEDTYRVL TAVDSALMVI DAANGVEAQT
RRLIEVCRQR DTPIITFVNK MDREVREPLD ILDEVERELG MPCVPMTWPV GQGKSFRGIM
NLRTQTMTVF ESGSERLPHD FETIALTERD TLTKRFGADF ESAMDSMELA TGASPTWDRE
AFLSGKQTPV FFGSGVNNFG VMEVLDALVD LAPSPQSRTS TTMVNRQPVV KEIQPEDRDF
AGVVFKVQAN MDANHRDRIA FVRMASGKYT PGMKLKVQRT SKELRPTSVV TFMSQRREAV
EEAYAGDIVG FTTHGGVQLG DTITDGASLQ FTGLPFFAPE LFMTVILKNP LRTKQLQQGL
AQLGEEGAIQ VFRPEIGGPM LLGAVGQLQF EVVQHRLKAE YDADVRLEGC QYTGARWITA
DSPAELREFV NAYPQRMAKD AADTLAFLCT SPYDVRLAQE RFPKIHFHPL REHAGLALQN
AG
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