| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4672 |
|---|
| Symbol | |
|---|
| ID | 7972883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4960888 |
|---|
| End bp | 4962120 |
|---|
| Gene Length | 1233 bp |
|---|
| Protein Length | 410 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644795257 |
|---|
| Product | tyrosyl-tRNA synthetase |
|---|
| Protein accession | YP_002946543 |
|---|
| Protein GI | 239817633 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0162] Tyrosyl-tRNA synthetase |
|---|
| TIGRFAM ID | [TIGR00234] tyrosyl-tRNA synthetase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAATGCCG AATCTGTTAC ATCCACAAGC CTCTCGGATG GTGTAAGACG AGCGCTCGAA
ATATCGCTCA GGGGCACCGA CGAACTGCTG CCGCAGGATG AATGGGTGCG CAAGCTGCAG
CGCTCGGAAG CCAGCGGGAC GCCGCTGCGC ATCAAATTGG GGCTCGACCC GACCGCCCCG
GACATCCACA TCGGCCACAC GGTGGTGCTC AACAAGATGC GGCAGCTGCA GGATCTGGGG
CACCGGGTCA TCTTCCTGAT CGGCGACTTC ACGACCACCA TCGGCGATCC CTCGGGCCGC
AACAGCACCC GCCCGCCGCT GACCCGCGAG CAGATCGAGG CCAATGCCCA GACCTACTAC
CGGCAGGCCA GCCTGGTGCT GGACCCCGAA AAGACCGAGA TCCGCTACAA CTCCGAGTGG
AGCGACCCCC TGGGTGCCCG CGGCATGATC CAGCTGGCCG CCAAGTACAC GGTGGCGCGG
ATGATGGAGC GCGACGACTT CAACAAGCGC TTCAAGGCCG GCCAGTCGAT CTCGGTGCAC
GAATTCCTCT ACCCGCTGAT GCAGGGCTAT GACTCGGTGG CCCTGAAGAG CGACCTCGAG
CTGGGCGGCA CCGACCAGAA GTTCAACCTG CTCGTCGGCC GGCATCTCCA GCAGGAATAC
GGCCAGGAAC CGCAGTGCAT ACTCACTATG CCGCTGCTGG AAGGGCTCGA TGGCGTCGAG
AAGATGTCCA AGAGCAAGAA CAACTACATC GGCATCAGCG AAGACGCCAA CACCATGTTC
GCCAAGGTGC TGTCGATCTC CGACGAGCTG ATGTGGCGCT GGTACACGCT GCTGAGCTTC
CAGTCGCTCG CGCAGATCGA GGCGCTCAAG GCCGAGATCG CGGCCGGCCG CAATCCCAAG
GATGCGAAGG TGGCGCTGGC CAAGGAAATC ACCGCGCGCT TCCACAGCGC GGCCGCGGCC
GAGACCGCGG AACAGGATTT CATCAACCGC AGCAAGGGCG GCGTGCCCGA CGACATTCCC
GAACTGTCGC TGGGCGGGGC CCCGCTGGGC ATTGCGCAGC TGCTCAAGCA GGCCGGGCTC
GCGCCTTCGG CCTCCGAAGG CAACCGGCTG ATCGACGGCG GCGGCGTGCG CGTCGACTCC
GTGGTGATCA GCGACAAGGC GCTCAAGCTG CCCGCGGGCC GCTACGTGGT GCAGGTCGGC
AAGCGCAAGT TCGCGCGTGT GACCCTCGGC TGA
|
|---|
| Protein sequence | MNAESVTSTS LSDGVRRALE ISLRGTDELL PQDEWVRKLQ RSEASGTPLR IKLGLDPTAP
DIHIGHTVVL NKMRQLQDLG HRVIFLIGDF TTTIGDPSGR NSTRPPLTRE QIEANAQTYY
RQASLVLDPE KTEIRYNSEW SDPLGARGMI QLAAKYTVAR MMERDDFNKR FKAGQSISVH
EFLYPLMQGY DSVALKSDLE LGGTDQKFNL LVGRHLQQEY GQEPQCILTM PLLEGLDGVE
KMSKSKNNYI GISEDANTMF AKVLSISDEL MWRWYTLLSF QSLAQIEALK AEIAAGRNPK
DAKVALAKEI TARFHSAAAA ETAEQDFINR SKGGVPDDIP ELSLGGAPLG IAQLLKQAGL
APSASEGNRL IDGGGVRVDS VVISDKALKL PAGRYVVQVG KRKFARVTLG
|
|---|
| |