Gene Vapar_4672 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4672 
Symbol 
ID7972883 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand
Start bp4960888 
End bp4962120 
Gene Length1233 bp 
Protein Length410 aa 
Translation table11 
GC content65% 
IMG OID644795257 
Producttyrosyl-tRNA synthetase 
Protein accessionYP_002946543 
Protein GI239817633 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0162] Tyrosyl-tRNA synthetase 
TIGRFAM ID[TIGR00234] tyrosyl-tRNA synthetase 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGAATGCCG AATCTGTTAC ATCCACAAGC CTCTCGGATG GTGTAAGACG AGCGCTCGAA 
ATATCGCTCA GGGGCACCGA CGAACTGCTG CCGCAGGATG AATGGGTGCG CAAGCTGCAG
CGCTCGGAAG CCAGCGGGAC GCCGCTGCGC ATCAAATTGG GGCTCGACCC GACCGCCCCG
GACATCCACA TCGGCCACAC GGTGGTGCTC AACAAGATGC GGCAGCTGCA GGATCTGGGG
CACCGGGTCA TCTTCCTGAT CGGCGACTTC ACGACCACCA TCGGCGATCC CTCGGGCCGC
AACAGCACCC GCCCGCCGCT GACCCGCGAG CAGATCGAGG CCAATGCCCA GACCTACTAC
CGGCAGGCCA GCCTGGTGCT GGACCCCGAA AAGACCGAGA TCCGCTACAA CTCCGAGTGG
AGCGACCCCC TGGGTGCCCG CGGCATGATC CAGCTGGCCG CCAAGTACAC GGTGGCGCGG
ATGATGGAGC GCGACGACTT CAACAAGCGC TTCAAGGCCG GCCAGTCGAT CTCGGTGCAC
GAATTCCTCT ACCCGCTGAT GCAGGGCTAT GACTCGGTGG CCCTGAAGAG CGACCTCGAG
CTGGGCGGCA CCGACCAGAA GTTCAACCTG CTCGTCGGCC GGCATCTCCA GCAGGAATAC
GGCCAGGAAC CGCAGTGCAT ACTCACTATG CCGCTGCTGG AAGGGCTCGA TGGCGTCGAG
AAGATGTCCA AGAGCAAGAA CAACTACATC GGCATCAGCG AAGACGCCAA CACCATGTTC
GCCAAGGTGC TGTCGATCTC CGACGAGCTG ATGTGGCGCT GGTACACGCT GCTGAGCTTC
CAGTCGCTCG CGCAGATCGA GGCGCTCAAG GCCGAGATCG CGGCCGGCCG CAATCCCAAG
GATGCGAAGG TGGCGCTGGC CAAGGAAATC ACCGCGCGCT TCCACAGCGC GGCCGCGGCC
GAGACCGCGG AACAGGATTT CATCAACCGC AGCAAGGGCG GCGTGCCCGA CGACATTCCC
GAACTGTCGC TGGGCGGGGC CCCGCTGGGC ATTGCGCAGC TGCTCAAGCA GGCCGGGCTC
GCGCCTTCGG CCTCCGAAGG CAACCGGCTG ATCGACGGCG GCGGCGTGCG CGTCGACTCC
GTGGTGATCA GCGACAAGGC GCTCAAGCTG CCCGCGGGCC GCTACGTGGT GCAGGTCGGC
AAGCGCAAGT TCGCGCGTGT GACCCTCGGC TGA
 
Protein sequence
MNAESVTSTS LSDGVRRALE ISLRGTDELL PQDEWVRKLQ RSEASGTPLR IKLGLDPTAP 
DIHIGHTVVL NKMRQLQDLG HRVIFLIGDF TTTIGDPSGR NSTRPPLTRE QIEANAQTYY
RQASLVLDPE KTEIRYNSEW SDPLGARGMI QLAAKYTVAR MMERDDFNKR FKAGQSISVH
EFLYPLMQGY DSVALKSDLE LGGTDQKFNL LVGRHLQQEY GQEPQCILTM PLLEGLDGVE
KMSKSKNNYI GISEDANTMF AKVLSISDEL MWRWYTLLSF QSLAQIEALK AEIAAGRNPK
DAKVALAKEI TARFHSAAAA ETAEQDFINR SKGGVPDDIP ELSLGGAPLG IAQLLKQAGL
APSASEGNRL IDGGGVRVDS VVISDKALKL PAGRYVVQVG KRKFARVTLG