| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4665 |
|---|
| Symbol | |
|---|
| ID | 7972876 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4956231 |
|---|
| End bp | 4956803 |
|---|
| Gene Length | 573 bp |
|---|
| Protein Length | 190 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 644795250 |
|---|
| Product | Holliday junction DNA helicase RuvA |
|---|
| Protein accession | YP_002946536 |
|---|
| Protein GI | 239817626 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0632] Holliday junction resolvasome, DNA-binding subunit |
|---|
| TIGRFAM ID | [TIGR00084] Holliday junction DNA helicase, RuvA subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGATAGGCA AACTCACCGG CATCCTGGCC GAGCGCAACC CACCGCAGGT GGTGGTGGAC
TGCAACGGCG TCGGCTACGA GGTCGATGTG CCGATGAGCA CGTTCTACAA CCTGCCCGGC
ACCGGAGAGC GCGTTTCGCT GCTCACGCAC TTCGTGGTGC GCGAGGACGC GCAGATTCTC
TACGGTTTCG GCACCGCCGA GGAGCGTGCG GCCTTTCGGC AACTCATCAA GATCAGCGGC
GTGGGCCCGC GCACCGCGCT CGGCCTGCTG TCGGGCATGA GCGTGGGCGA GCTGTCGCAG
GCGATCACCA CGCAGGAGCT CGGCCGGCTC GTGAAGATCC CGGGCATCGG CAAGAAGACC
GCCGAGCGGC TGCTGCTCGA ACTCAAGGGC AAGCTGGGCG CCGACATCGG GCTGCCCGCC
CATGCGGCCA CCGACGCGCA GGCCGACATC CTGCAGGCGC TGGTCGCGCT GGGCTACAGC
GACAAGGAAG CCGCGCTGGC GCTCAAGGCA CTGCCGAAGG ACGCGACGGT GAGCGAGGGG
ATCAAGCTGG CGTTGAAGGC ATTGGCGAAA TAA
|
|---|
| Protein sequence | MIGKLTGILA ERNPPQVVVD CNGVGYEVDV PMSTFYNLPG TGERVSLLTH FVVREDAQIL
YGFGTAEERA AFRQLIKISG VGPRTALGLL SGMSVGELSQ AITTQELGRL VKIPGIGKKT
AERLLLELKG KLGADIGLPA HAATDAQADI LQALVALGYS DKEAALALKA LPKDATVSEG
IKLALKALAK
|
|---|
| |