Gene Vapar_4650 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4650 
Symbol 
ID7972861 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp4942179 
End bp4942841 
Gene Length663 bp 
Protein Length220 aa 
Translation table11 
GC content71% 
IMG OID644795235 
Product2OG-Fe(II) oxygenase 
Protein accessionYP_002946521 
Protein GI239817611 
COG category[L] Replication, recombination and repair 
COG ID[COG3145] Alkylated DNA repair protein 
TIGRFAM ID[TIGR00568] DNA alkylation damage repair protein AlkB 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
GTGACCTTCG ACCTTTTCTC CGATGCCCTC GAAGACGCCG CACTGCCGCG CGGCAAAGAG 
GCGATCGGCC CTGGCGCGTT CGTCCTGCGC GGGTTTGCGC TGCCGTATGT CGACGAACTG 
CTGTCCGCGC TGCACGAGGT CGAGCAGCGC GCCGCCTTCC GCCACCTCGT GACCCCCGGC 
GGCTTCGCGA TGTCGGTTGC CATGACCAAC TGCGGCCGGC TCGGTTGGAT CTCGGACCGG 
CGCGGCTATC GCTATGGCGA GCACGATCCC GAAACCGGCC TGCCCTGGCC CGCCATGCCG 
GCGGCCTTCG CGCGCCTGGC CCAGGCCTCG GCCGCCGAGG CCGGATTTGC GGGCTTCGAA 
CCCGACGCCT GCCTGGTGAA CCGCTACGAG CCCGGCACGC GGCTGTCGTT GCACCAGGAC 
AAGGACGAGC GCGACTACGG CGCGCCCATC GTCTCGGTGT CGCTCGGGAT GCCGGCCACC 
TTTCTCTTCG GCGGCCTCGC CCGCAGCGAC AAGGCCGCAC GCATTCCGCT GGTGCACGGC 
GACGTGGTGG TGTGGGGCGG GCCCGACCGG CTGCGCTACC ACGGCGTGCT GCCGCTCGAA 
GACCGACCGC ACGCGCTGCT GGGCAGCCGG CGCATCAACC TGACTTTTCG CAAAGCGGGA 
TGA
 
Protein sequence
MTFDLFSDAL EDAALPRGKE AIGPGAFVLR GFALPYVDEL LSALHEVEQR AAFRHLVTPG 
GFAMSVAMTN CGRLGWISDR RGYRYGEHDP ETGLPWPAMP AAFARLAQAS AAEAGFAGFE 
PDACLVNRYE PGTRLSLHQD KDERDYGAPI VSVSLGMPAT FLFGGLARSD KAARIPLVHG 
DVVVWGGPDR LRYHGVLPLE DRPHALLGSR RINLTFRKAG