| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4648 |
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| Symbol | |
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| ID | 7972858 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4939002 |
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| End bp | 4939670 |
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| Gene Length | 669 bp |
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| Protein Length | 222 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795232 |
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| Product | RNA polymerase, sigma-24 subunit, ECF subfamily |
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| Protein accession | YP_002946519 |
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| Protein GI | 239817609 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGCGC TGCCCCGCGC CCCTTCCGCC AATGCCGCCA CCGAGCGCGA CGCCATGCCT
GACGACCAGT TGATGCTGGC CTACGCGCGC GGCGACGGCG CGGCGTTCGA CGTGCTCTAT
GCGCGCCACG AGGGCGGGCT GTTCCGCTTC GTCAAGCGGC TGCTGGGCGT CCGGCTGGCC
GCGCAGGCGG ACGAGGTGTT CCAGGACACC TGGGTGCGCA TCATCTCGGC GCGCGACAGT
TTTTCGCCGC AGGGCGCCGC CTGGCGCACC TGGGCCTTCA CGATTGCGCA CAACCTGGCG
ATGGACCGGC TGCGCGTGAG CGGGCGCGAG GTGGCGCTCG ATGCCGCGCA TACGGACGAT
GGCGAGGACG CCTTTCCCAC GCTCGACCGC GGCGTGCGCG GCGCGATGGA TGCCGCGGCG
CATCCATCGG CCGAAGAACT CGCGTTCTGG CGCGCCGCCG GCCGGCGCCT GCTGGCCTGC
CTCGACGAAC TGCCGCCCGA GCAGCGCGCC GCGTTCCTGC TGCACCATGA AGACGGGCTG
ACGGTCGAAG CGCTCGCGGC CAGCCTGCAG ATCGGCTTCG AGACCGTGCG AAGCCGCCTG
CGCTATGGGC TGCAGAAACT GCGCGGCTGC ATGGAGCGCT ACCTGTCGGT GCTGGAGCAG
CGCGCATGA
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| Protein sequence | MSALPRAPSA NAATERDAMP DDQLMLAYAR GDGAAFDVLY ARHEGGLFRF VKRLLGVRLA
AQADEVFQDT WVRIISARDS FSPQGAAWRT WAFTIAHNLA MDRLRVSGRE VALDAAHTDD
GEDAFPTLDR GVRGAMDAAA HPSAEELAFW RAAGRRLLAC LDELPPEQRA AFLLHHEDGL
TVEALAASLQ IGFETVRSRL RYGLQKLRGC MERYLSVLEQ RA
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