| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4645 |
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| Symbol | |
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| ID | 7972855 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4935035 |
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| End bp | 4936891 |
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| Gene Length | 1857 bp |
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| Protein Length | 618 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 644795229 |
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| Product | peptidase M61 domain protein |
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| Protein accession | YP_002946516 |
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| Protein GI | 239817606 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG3975] Predicted protease with the C-terminal PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.348977 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCCGCGC CGACCGTTTC CCGGCGCGCG CGAGCGGCTG CGCCGGCCGC CGCGGTGCAC
TACCGCATCG AGTGCGCCGA CCTGCATGCG CACCTCTTCG CCGTCACCCT GACCATCGAG
GCCCCCGCCG CGCAGCAGCG CGTGGCGCTG CCGGTGTGGA TTCCGGGCAG CTACCTGGTG
CGCGAGTTCG CCAAGAACCT GCAGGGCCTG CGCGCCACGC AGGGACGCCG CAAGCCCGCG
CTGACGCAGC TCGACAAGTG CAGCTGGCAG GTCGACTGCG TGCCGGGCCA GCCGCTGGTG
CTGCACTACC AGGTCTGCGC CTACGACAAC TCGGTGCGCA CCGCCTGGCT CGACGCCGGC
CGCGGCTTCT TCAACGGCAC CAGCCTGTGC CTGCGGGTCG AGGGCCAGAC CGATGCGCCG
CATGCGCTGG ACATCAGCGC GCCCGCCCTG CCGCCCGGCG ACGATGCGCG CTGGTCGTGC
GCCACCGCGC TCGTGCCCGA GAAGATCGAC AAGCTCGGCT TCGGCCGCTA CCTGGCCGCT
GGCTACGACG AGCTGGCCGA CAGCCCGGTC GAGATGGGCC CCTTCTGGAG CGCCGAGTTC
GAGGCCTGCG GCGTGCCGCA CCGCTTCGTC ATCGCAGGTG CCGCTGCCTC GTTCGACGGC
GAGCGCCTGA TCGCCGACAC GCAGGCCATC TGCGAAGCCG AGATCCGCTT CTGGCATGGC
GACAAGGCCG GCAAGCGAGG CGGCCCCAAG CTGCCGATCG ACCGCTACGT GTTCATGCTC
AACGCGGTGG ACGACGGCTA CGGCGGCCTG GAGCACCGGC ACTCCACCGC GCTGATCTGC
AACCGGCGCG ACCTGCCCCA GCGCGGCGCG AAGAAGCAGC CCGAGGGCTA CACCACGCTG
ATGGGCCTCA TCAGCCACGA GTACTTCCAC ACCTGGAACG TCAAGCGCAT GCGCCCGGCC
GAGTTCGCGC ACTACGACTA CAGCCGCGAG AACTACACGC AGATGCTGTG GTTCTTCGAG
GGCTTCACCA GCTACTACGA CGACCTGCTG CTGCGCCGTG CCGGCCGCAT CGACGACGCT
GGCTACCTGC GCCTGCTCAA CAAGACCGTG AACCAGGTGC TGCAGACACC GGGCCGGCTC
GTGCAGTCGG TGGCCGAGGC GAGCTTCGAC GCCTGGGTCA AGTACTACCG GCAGGACGAG
CAAACGCCCA ACGGCACCGT CAGCTACTAC ACCAAGGGCG CGCTGGTGGC GCTGTGCTTC
GACCTCAGCT TGCGCCGCGA AGGCAAGGGC ACGCTCGACG ACGTGATGCG CCACCTCTGG
ACCGAGGGCG GCGGCGGCCC GATCAGCGAA GCCGACGTGG CCGCGGCGCT CCAGGCCGTG
GGCGGCCGCT CCTATGCGGC GGAAATCGCG CAGTGGATCC ACTCGACCGA CGAGCTGCCG
CTGGCAGATT TGCTGCGCGC GCATGGCGTG GCTGCGCTCG AAGACCCGTC GCAGCAGGCG
CAGGCGCTGG GCCTGCGCGT GGCCGAGGCC AACGGCAGCG TCCAGGTCAA GGTGGTGCTG
CGCGGCGGCG CGGCCGAAAA GGCCGGCTTC TCGGCCCACG ACGAATGGAT CGGCGTCGAG
CTGCCCGCTG TGGGCCGCAA GGGCCAGCAG CGCCCCGCGC AGGCCTGGCG CATCGCCAAG
CTCGACGACC TGTCGCTGTA CCTTGGCGAC GCCACCCGCT GCACCGCGCT GGTGGCGCGC
GACCGCAAGC TGCTGAGGCT GCCGCTGGTG CTGCCGGAGG GCGCCACCAC CTGGCGCCTG
TTCTCGCACG ACGCCGCAAA GATCGCGGCC TGGCTCGCGC CGGGCGCGCG GCGCTGA
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| Protein sequence | MAAPTVSRRA RAAAPAAAVH YRIECADLHA HLFAVTLTIE APAAQQRVAL PVWIPGSYLV
REFAKNLQGL RATQGRRKPA LTQLDKCSWQ VDCVPGQPLV LHYQVCAYDN SVRTAWLDAG
RGFFNGTSLC LRVEGQTDAP HALDISAPAL PPGDDARWSC ATALVPEKID KLGFGRYLAA
GYDELADSPV EMGPFWSAEF EACGVPHRFV IAGAAASFDG ERLIADTQAI CEAEIRFWHG
DKAGKRGGPK LPIDRYVFML NAVDDGYGGL EHRHSTALIC NRRDLPQRGA KKQPEGYTTL
MGLISHEYFH TWNVKRMRPA EFAHYDYSRE NYTQMLWFFE GFTSYYDDLL LRRAGRIDDA
GYLRLLNKTV NQVLQTPGRL VQSVAEASFD AWVKYYRQDE QTPNGTVSYY TKGALVALCF
DLSLRREGKG TLDDVMRHLW TEGGGGPISE ADVAAALQAV GGRSYAAEIA QWIHSTDELP
LADLLRAHGV AALEDPSQQA QALGLRVAEA NGSVQVKVVL RGGAAEKAGF SAHDEWIGVE
LPAVGRKGQQ RPAQAWRIAK LDDLSLYLGD ATRCTALVAR DRKLLRLPLV LPEGATTWRL
FSHDAAKIAA WLAPGARR
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