| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4628 |
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| Symbol | |
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| ID | 7972838 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4918200 |
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| End bp | 4919165 |
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| Gene Length | 966 bp |
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| Protein Length | 321 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795212 |
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| Product | Phosphomethylpyrimidine kinase type-1 |
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| Protein accession | YP_002946499 |
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| Protein GI | 239817589 |
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| COG category | [H] Coenzyme transport and metabolism |
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| COG ID | [COG0351] Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase |
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| TIGRFAM ID | [TIGR00097] phosphomethylpyrimidine kinase |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.554613 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGACCATCT ACTTACATCC AGCAGACCAC GCCCGCAAAC CGGGCAATCT TAACGACCCC
TCGCCGGACG CCGAAGAGGT GGCCGAGCGC GACCTGAATC CGCCCTGCGT GCTGGTCTTC
AACGCCAGCG ATCCGAGCGG CGCGGGCGGC CTGGGCGCGG ACGCACTGGC CATGGCCTCG
GTCGGCGCGC ACATGCTGCC GGTGGTGACA GGCGCCTACG CCCGCGACAC AGCCGAGATC
TTCGACCATT TCGCCTTCGA GGAAGAGGCC ATCGCCGAGC AGGCGCGCGC CATCCTCGAG
GACGTGGAGG TCCAGCTCAT CAAGGTGGGC TTCGTCGGAA CGCCCGACGC GCTGAGCACC
ATCGCCGAGA CCGCCTCCGA CTACCCCGAG GTGCCGCTGG TGGCCTACAT GCCCAACCTT
TCCTGGTGGG ACGAGGACCT CATCGAGGGC TATCTGGACG CCTTCCGCGA GCTGCTGCTG
CCCCAGGCCA CAGTGTTGGT TGGAAACCAC AGTACGCTGT GGCGATGGCT GCTGCCCGAC
TGGAGCGGCG AGCGTCCGCC CGGCGCGCGC GACATCGCCA AGGCCGCCGG CGAATTCGGC
GTGCCCTACA CGCTGGTGAC CGGCATGGTG CTGCCCGACC AGTTCATCGA CAACGTGCTG
GCCTCGCCGC AGTCGGTGCT CGCCAGCGAG AAATACGAGC GGCTCGAAGC GGTCTTTGCC
GGCGCGGGCG ACACGCTGTC GGCCGCGCTG GCCGCCCTGC TCGCGAGCGG CACCGACTTG
GTGGCCGCCA CCACCGAGGC CCTGGCCTAC ATGGACCGCT GCCTCGACGC GGGCTTTCGG
CCCGGCATGG GCCACGTGCT GCCGGACCGC CTGTTCTGGG CCGAGCCCGA AGACGACGAT
GACGACGATG AAGACCCCGA CGCGCCGCAA GACTTTGCCC TGCCCCCTCA CGACACCCGA
CACTGA
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| Protein sequence | MTIYLHPADH ARKPGNLNDP SPDAEEVAER DLNPPCVLVF NASDPSGAGG LGADALAMAS
VGAHMLPVVT GAYARDTAEI FDHFAFEEEA IAEQARAILE DVEVQLIKVG FVGTPDALST
IAETASDYPE VPLVAYMPNL SWWDEDLIEG YLDAFRELLL PQATVLVGNH STLWRWLLPD
WSGERPPGAR DIAKAAGEFG VPYTLVTGMV LPDQFIDNVL ASPQSVLASE KYERLEAVFA
GAGDTLSAAL AALLASGTDL VAATTEALAY MDRCLDAGFR PGMGHVLPDR LFWAEPEDDD
DDDEDPDAPQ DFALPPHDTR H
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