| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4621 |
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| Symbol | |
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| ID | 7972831 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4906856 |
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| End bp | 4907938 |
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| Gene Length | 1083 bp |
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| Protein Length | 360 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 644795205 |
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| Product | transcriptional regulator, LuxR family |
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| Protein accession | YP_002946492 |
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| Protein GI | 239817582 |
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| COG category | [K] Transcription |
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| COG ID | [COG2771] DNA-binding HTH domain-containing proteins |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.565465 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACCGGA ATCTCGCATT GCGCCGCGCG CTCGACGCCA TCGCGCACCT GGACGATCCG
CAGCCGCCAT GGAAGGAGCT GCTGCAAAGC ATGCAGCAGG TGATCGGCGG CGACAGCGCC
ACCTTCATCC TGCTGGAGCG CGGCAGCGAG CTGCTGAGCT TTCAGCAGGT CAATGTTTCA
CCGGCCGCCG AGCGCGAATA TGTGCAGCAT TTCTGCGCGC ACGACATCCT GATTCCGCCG
ACCTTGGGCG CCGCGCCCGG GAGCTGGTTC GACACGCACG AGCTGTTCTC GCCCGCCTTT
CTCCCGAAGA ACCTCTACTA CGCCGACTTC ATGTGCCGAC ACGGCGCGCG CCAGATGCTG
GCCTGCGTCG TCGACGAGGG CCCGCAGCGC CGCGGCGGCC TGACGGTGCA GCGCAGCACG
GCCGCGCATG CGCGCCGGCT GCTCGACAGC ACGCGGATCC GCCGCGTCAC CCAGGCGCTG
CGCCACGGGC TGGCGCGCCG CGACGAGCGC GCCCGGCTGT GGCTCGGCGG CGCCGAATCC
GCGCTCGCGG CCTTCGGCGA GGCGGTCTTG CTGCTGACGC CTGCGGGCAC GGTGCTGCGC
GCATCGGCCG GCGCGCAGGA GTTCTTCGGC ACCAGCCGCT TGCTGCGCCT GCGCGGCCAG
CGGCTCTGGC ATCCGGATGC ACAGACGCAG CAGGCGCTGG CGGCCGGCCT GCGGCTGGCG
GCGCAATCGC GTCAGCGGGT CTGCCTGCCC ATCGCCGGCG GATCGGCAGG CCTGCAAGAA
CTGGAAATGG CTCGCGCCGC ACCGCAGCTG AGCCTGGGCG AGGAGGTGCT GGTGCTGGCG
CGCATCCGCC TCGGCCGTTC GCAGGCGGCG CCCTCGACCG ACGGCCTCTG CAGCGCCTTC
GGCATCACGC CTGCCGAGGC GCGCGTGCTG GCGGCGCTGG TCGCGGGCCA GTCGCCCAAG
CAGCATGCCG GCGCGCAGGG CGTGTCGGTG CACACGGTGC GCAGCCAGCT CGGCTCGCTG
ATGGCCAAGA TGGGCTGCAC GCGGCAGGTC GACCTGGTGC GCAAGGCGCT GCTTGCGCCC
TAG
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| Protein sequence | MNRNLALRRA LDAIAHLDDP QPPWKELLQS MQQVIGGDSA TFILLERGSE LLSFQQVNVS
PAAEREYVQH FCAHDILIPP TLGAAPGSWF DTHELFSPAF LPKNLYYADF MCRHGARQML
ACVVDEGPQR RGGLTVQRST AAHARRLLDS TRIRRVTQAL RHGLARRDER ARLWLGGAES
ALAAFGEAVL LLTPAGTVLR ASAGAQEFFG TSRLLRLRGQ RLWHPDAQTQ QALAAGLRLA
AQSRQRVCLP IAGGSAGLQE LEMARAAPQL SLGEEVLVLA RIRLGRSQAA PSTDGLCSAF
GITPAEARVL AALVAGQSPK QHAGAQGVSV HTVRSQLGSL MAKMGCTRQV DLVRKALLAP
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