Gene Vapar_4617 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4617 
Symbol 
ID7972827 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand- 
Start bp4902512 
End bp4903111 
Gene Length600 bp 
Protein Length199 aa 
Translation table11 
GC content65% 
IMG OID644795201 
Productprotein of unknown function DUF179 
Protein accessionYP_002946488 
Protein GI239817578 
COG category[K] Transcription 
COG ID[COG1678] Putative transcriptional regulator 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGGCTGCCG ATTCTGCCCC GATGAACCTT ACGCATCACT TCCTGATCGC GATGCCGGGG 
ATGGAAGATA AAACTTTCAA CCGCAGCGTC GTCTACCTGT GCGAGCACAG CGAGCGCGGT 
GCGCTCGGGC TGGTGATCAA CAAACCCAGC GACATCAACC TGAAGGTGCT GTTCGAGAAG 
ATCGAACTGC ACCTGTCGCG CCCCGAACTC GGCGACGCAC CCGTTTTCCA GGGCGGGCCG 
GTGCAGACCG AGCGCGGCTT CGTGCTGCAC GAGCCGGTGT TCACCCATGC CGAGAAGCCC 
GAGGAATCGG TCTACGCCTC GACCATGACC ATTCCCGGCG GCCTCGAAAT GACCACCTCC 
AAGGACGTGC TCGAAGCCCT GGCCACCGGC GCGGGCCCGC GCAAGGTGCT GGTTTCGCTG 
GGCTATTCAG CCTGGGGCGA GGGGCAGCTC GAATCGGAAC TGGCCGAGAA CAGCTGGCTC 
ACCGTGGGCG CCGATCCGGC CGTGATCTTC GACACGCCGG TCGAGCAGCG CTACGACCGG 
GCGCTGCTGC TGCTGGGCCT GGAAGCCTGG AAACTGTCGC CGGAAGCGGG ACACGCGTGA
 
Protein sequence
MAADSAPMNL THHFLIAMPG MEDKTFNRSV VYLCEHSERG ALGLVINKPS DINLKVLFEK 
IELHLSRPEL GDAPVFQGGP VQTERGFVLH EPVFTHAEKP EESVYASTMT IPGGLEMTTS 
KDVLEALATG AGPRKVLVSL GYSAWGEGQL ESELAENSWL TVGADPAVIF DTPVEQRYDR 
ALLLLGLEAW KLSPEAGHA