| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4614 |
|---|
| Symbol | pyrB |
|---|
| ID | 7972824 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4900595 |
|---|
| End bp | 4901557 |
|---|
| Gene Length | 963 bp |
|---|
| Protein Length | 320 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 644795198 |
|---|
| Product | aspartate carbamoyltransferase catalytic subunit |
|---|
| Protein accession | YP_002946485 |
|---|
| Protein GI | 239817575 |
|---|
| COG category | [F] Nucleotide transport and metabolism |
|---|
| COG ID | [COG0540] Aspartate carbamoyltransferase, catalytic chain |
|---|
| TIGRFAM ID | [TIGR00670] aspartate carbamoyltransferase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGCTCTACA AGCGAAACCC GCAACTCAAC AAGAACGGCG AGCTGATCCA CCTGCTGTCG
ATCGAGGGCC TGCCCAAGGA CATCGTCACG CACATCCTCG ACACCGCCGC CAACTTCACG
AGCGTGAGCG ACCGCGAGGT GAAGAAGGTG CCGCTGCTGC GCGGCAAGAG CGTGTTCAAC
CTGTTCTTCG AGAACTCGAC GCGCACCCGC ACCACCTTCG AGATCGCGGC CAAGCGCCTG
TCGGCCGACG TCATCAACCT GGACATCGCG CGCTCCTCGG CCACCAAGGG CGAGTCGCTG
CTCGACACCA TCGCCAACCT GAGCGCGATG GCGGCCGACC TGTTCGTGGT GCGCCACAGC
GAGTCGGGCG CGCCCTACCT GATCGCGCAG CATGTGGCGC CGCACGTGCA CGTGGTGAAC
GCCGGCGACG GCCGCCATGC GCACCCGACG CAGGGGCTGC TCGACATGTA CACGATCCGC
CACTACAAGA AGGATTTTGC GAACCTCACG GTGGCCATCG TTGGCGACGT GCTGCACTCG
CGCGTGGCGC GCTCCGACAT CCATGCGCTC ACCACGCTCG GCTGCGCCGA GGTGCGCGTG
GTCGGCCCCA AGACGCTGGT GCCCGGCGAC ATGGCCGGCA TGGGCGTGCG CGTGTGCCAC
ACGCTCGAAG AGGGCATCAG GGATTGCGAC GTGATCATCA TGCTGCGCCT GCAGAACGAG
CGCATGAGCG GCGCGCTGCT GCCCTCGTCG CAGGAGTTCT TCAAGACCTA CGGGCTCACG
CCCGAGAAGC TGCAGCTGGC GAAGTCGGAT GCCATCGTGA TGCATCCGGG CCCCATCAAC
CGCGGCGTGG AGATCGACTC TGCCGTGGTC GATGGAAAGC AAAGCGTGAT CCTTCCCCAG
GTCACCTTCG GCATCGCCGT TCGAATGGCC GTCATGAGCA TCGTCGCAGG TAACGAAGCA
TAG
|
|---|
| Protein sequence | MLYKRNPQLN KNGELIHLLS IEGLPKDIVT HILDTAANFT SVSDREVKKV PLLRGKSVFN
LFFENSTRTR TTFEIAAKRL SADVINLDIA RSSATKGESL LDTIANLSAM AADLFVVRHS
ESGAPYLIAQ HVAPHVHVVN AGDGRHAHPT QGLLDMYTIR HYKKDFANLT VAIVGDVLHS
RVARSDIHAL TTLGCAEVRV VGPKTLVPGD MAGMGVRVCH TLEEGIRDCD VIIMLRLQNE
RMSGALLPSS QEFFKTYGLT PEKLQLAKSD AIVMHPGPIN RGVEIDSAVV DGKQSVILPQ
VTFGIAVRMA VMSIVAGNEA
|
|---|
| |