| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4602 |
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| Symbol | |
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| ID | 7973300 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4881685 |
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| End bp | 4883019 |
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| Gene Length | 1335 bp |
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| Protein Length | 444 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 644795186 |
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| Product | type I secretion outer membrane protein, TolC family |
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| Protein accession | YP_002946473 |
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| Protein GI | 239817563 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01844] type I secretion outer membrane protein, TolC family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.355652 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGTCTGCTT CCCGTCTCCT TCCGCCCGCC GCCGCGGGCC TTTTCTTCCT GCTCGCCGGC
ACGGCGGCGT TTGCGCAAGC GAGCGCCGCC ACCCCGCTGG GCATGACCGA GGCCGTGCGC
CTGGCCGCCA CATCGCACCC GACCGTGCGC AACGCCGTCG GGCAAGCGCT GCAGGCGGGC
GAGGGCATTG CGGACGCACG CTCGGGCTAC TACCCGCAGG TCAGCGCGGG CCTCAGCGCA
CGCACGGGCA ACCGCCAGCT CCAGACCGAC GGTCGCCGCC AGGTGCACCA GGCCTCGCTG
TCGGTGACCC AGATGCTGTA CGACTTCGGC AAGGTGTCGA GCGCCGTGAA CGAGGCCGAG
GCCTCGGCCA CGGCCGCGCG CGCCAAGCTG CTGTTGGCGG TCGACGACGT GGTGCGCGAC
ACCGCCCAGG CATGGATCGA AGTGCATCGC CAGCAGGCGC TCGGCGAAAT CGCGCAGGCC
CAGGTGAAGG GCGTGCAGTC GCTGGCCGGC CTGGTGGGCG AGCGCCAGGC CAAGGGCGCC
ACCAGCCAGT CCGACGTGGC ACAGGCGCAG TCGCGCCTGG AGGCCGCGCG TGCCCAGCAA
CTCAACACCG CGTCCCAGGC CGAGCGCTGG CGCCTCAACC TCATGCATCT GACCCAGGGC
CGCATGCCGG CCGACATTGC CGGCGAAGCG TCGGCGCCGC TCGCGAGCGC CTGCGCCGCG
CACCCGCAGA CGGCCTTGCC CGCACCGGCC GTGCAGATGG CGCAGGCCGA GCGCGACATG
GCACAGGCCG CGCTGCGCGG TGCCGATGCG CAATTGCTGC CCACGCTGTC GCTCAACGCC
GGCGTCAACC GGGGGCTCGA ATCGGGCGCG CGGCTTGCCG GCCAGTCCGG CACCGAAAGC
ACGCTCACCG TGAACTTCAG CGCGCCGCTG TACGAAGGCG GGCGCAGCCA GGCCCGCCAG
CGCGCCGCCT TGCACGCGGT CGAAGCGGCC GAGGCCGCGC TGGGCTATGC ACAGCTCAAC
GTGCGGCAGC GGCTCGAAGA CGCGCGCGTG CAATCGCAAG GCCACGCGCA GCGCCTGCCC
GTGCTCGCCG CGCGCGTGCA CAGCACGCAG CGCACGCGCG ACCTGTACCG CGAGCAGTAC
CTGCAGCTGG GCACGCGCTC GCTGCTCGAC CTGCTCAATG CGGAGCAGGA GTTCCACGGC
GCGCGCTTCG AGCAGGCCGA GAGCGTGCAC GAAGTGCAGC GCCTCGCGGT CGAGTGCCTG
TACCAGTCGG GCCGCCTGCG CGAAGCCTTC GGGCTGGTCG ATGCGGGCGA GCTCGTGGCC
GGAGGCCAGC CATGA
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| Protein sequence | MSASRLLPPA AAGLFFLLAG TAAFAQASAA TPLGMTEAVR LAATSHPTVR NAVGQALQAG
EGIADARSGY YPQVSAGLSA RTGNRQLQTD GRRQVHQASL SVTQMLYDFG KVSSAVNEAE
ASATAARAKL LLAVDDVVRD TAQAWIEVHR QQALGEIAQA QVKGVQSLAG LVGERQAKGA
TSQSDVAQAQ SRLEAARAQQ LNTASQAERW RLNLMHLTQG RMPADIAGEA SAPLASACAA
HPQTALPAPA VQMAQAERDM AQAALRGADA QLLPTLSLNA GVNRGLESGA RLAGQSGTES
TLTVNFSAPL YEGGRSQARQ RAALHAVEAA EAALGYAQLN VRQRLEDARV QSQGHAQRLP
VLAARVHSTQ RTRDLYREQY LQLGTRSLLD LLNAEQEFHG ARFEQAESVH EVQRLAVECL
YQSGRLREAF GLVDAGELVA GGQP
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