| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4600 |
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| Symbol | |
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| ID | 7973298 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4878267 |
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| End bp | 4879499 |
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| Gene Length | 1233 bp |
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| Protein Length | 410 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 644795184 |
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| Product | type I secretion membrane fusion protein, HlyD family |
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| Protein accession | YP_002946471 |
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| Protein GI | 239817561 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG1566] Multidrug resistance efflux pump |
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| TIGRFAM ID | [TIGR01843] type I secretion membrane fusion protein, HlyD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAACGCCG TGACATTGAC CAAGGCACCG GTGCCTGCAC AGGTATCCAC CGCCACCGTG
TGGGGCCCCG GCGGTGCCGG CGACTTCGAC GAGGCCCGCG CCAGCGGCTC CGCGCGCGTC
GTGTGGTTCA TCGCGCTCTT TCTGCTCGCG TTCTTCGTGT GGGCCTGGTG CTTCGAGATC
GACGAAGTGT CCAGCGGCAT GGGCAAGGTG ATTCCCAGCT CGCGTGAGCA GCGCATCCAG
TCGCTCGAAG GCGGCATCCT TGCCGAGCTG CGCGTGCACG AAGGCCAGAT CGTCGAGAAG
GGCGAGGTGC TCGCGCAGCT CGACCCGACG CGCGGCGAAT CGAGCGTGGA AGAAACCGCC
GCGCGCTACC GCGCCGCACT GGCCAGCAGC GTGCGCCTGC GCGCCGAGGT GGAAGGGCAT
AGCACCCTTC AGTTCCCCGC CGAGCTGAAG GCGTACGCGC AGCTGGTCGA CTCCGAAAGC
GCGCTCTTCC GCTCGCGGCA GGGCAGCATG CGCGACACCG TTTCAGGCCT GGGCCAGGCG
CTTGCGCTCG TGCGCAAAGA GCTCGACATC ACGCGCTCGC TGCAGGTGAG CGGCGCGGCC
AGCAACGTCG AGCTCATCCG CCTGCAACGC CAGGCCGCCG ACTTGGAGCT GAAGATTTCC
GAGGCGCGAT CGAACTACAT GGTGCGCAGC CGCGAAGAAC TCGCCAAGGC CGATGCCGAG
GTGAAGTCCT TGTCGTCCGT GGTGCGCGGG CGTGCAGACT CGCTCGAGCG GCTCACCCTG
AACTCGCCCG TGCGCGGCAT CGTCAAGAGC TTGCAGGTCA CCACCATCGG CGGCGTCGTG
CCGCCTAACG GCTCGCTCCT GACCCTGGTG CCGCTGGACG ACCAGTTGCT GGTCGAAGCG
CGCATCTCGC CTCGCGACAT CGCCTTCATG CGGCCCGGGC AGGAGGCGCA GATCAAGGTC
ACCGCCTATG ACTACGCCGT GTACGGCGGC CTCAAAGGGC GTGTGGTGAC CATCGCACCC
GACACGCAGC GCGACGAGGT CAAGCCCGAG ATCGTCTACT ACCCCGTGCT CGTGCGCACC
GACTCCGACG CACTGACCGA CAAGGCCGGC CGCCGCATGC CCATCGTGCC CGGCATGGTG
ACCACCGCCG ACATCCGCAC CGGCCGCAAG ACCGTGTGGG ACTACCTGAC CAAGCCGCTG
AACAAGGCGC GCGAAGCCAT GCGCGAGCGC TGA
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| Protein sequence | MNAVTLTKAP VPAQVSTATV WGPGGAGDFD EARASGSARV VWFIALFLLA FFVWAWCFEI
DEVSSGMGKV IPSSREQRIQ SLEGGILAEL RVHEGQIVEK GEVLAQLDPT RGESSVEETA
ARYRAALASS VRLRAEVEGH STLQFPAELK AYAQLVDSES ALFRSRQGSM RDTVSGLGQA
LALVRKELDI TRSLQVSGAA SNVELIRLQR QAADLELKIS EARSNYMVRS REELAKADAE
VKSLSSVVRG RADSLERLTL NSPVRGIVKS LQVTTIGGVV PPNGSLLTLV PLDDQLLVEA
RISPRDIAFM RPGQEAQIKV TAYDYAVYGG LKGRVVTIAP DTQRDEVKPE IVYYPVLVRT
DSDALTDKAG RRMPIVPGMV TTADIRTGRK TVWDYLTKPL NKAREAMRER
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