| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4592 |
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| Symbol | |
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| ID | 7973290 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4863016 |
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| End bp | 4866009 |
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| Gene Length | 2994 bp |
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| Protein Length | 997 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 644795176 |
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| Product | Type III site-specific deoxyribonuclease |
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| Protein accession | YP_002946463 |
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| Protein GI | 239817553 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG3587] Restriction endonuclease |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTTC ACTTCGAGCC CAATCTGGAC TACCAGCTTC AAGCCATCGA GGCGGTCTGT
GACCTGTTCC GTGGGCAGGA AGCATGCCGA ACCGAGTTCA CGGTCACCAT GAAGCTGCCC
GACCAGCAAT TGACGCTGGG CGTGGCCGAG ACCGACCTTG GCGTTGGCAA TCGGTTGACG
TTGCTGGATG ACCAACTGCT GCAGAACCTG CGCGACGTTC AATTGCGCGG CGGCCTGGCG
CCGTCCAGCA TGCTGGCGTC GGGTGATTTC ACCGTCGAAA TGGAGACGGG CACCGGCAAG
ACCTACGTCT ACCTGCGCAC GATCTTCGAG CTGAACAAAC GCTACGGCTT CACCAAGTTC
GTCATCGTGG TGCCTTCGGT GGCCATCAAA GAAGGCGTCT ACAAGTCGCT GCAGATCACC
GAAGAGCACT TTAAGGGCAT CTATGCCGGG GTGCCGGTGG ACTTCTTCCT GTACGACTCG
GGCAAGCTGG GCCAAGTGCG CAACTTCGCC ACCAGTTCGA CCATCCAGGT CATGGTGGTC
ACGGTCGGCG CCATCAACAA GAAGGATGTC AACAACCTCT ATAAAGACAG CGAGAAGACG
GGCGGCGAGA AGCCCATTGA CCTGATCAAG GCGACACGGC CCATTGTCAT CGTGGACGAG
CCGCAGAGCG TGGACGGTGG CCTGACCGGC GCCGGCAAGA CCGCGCTGGA CGCCATGAAT
CCGCTGTGCA CGTTGCGCTA TTCGGCCACG CACGCCAACA AGCACCACAT GGTGTTCAGG
CTCGATGCGC TGGACGCCTA CGAACGCAAA CTGGTCAAGC AGATCGAGGT GGCGGCGGCC
ACCATCGAGG ACGCGTACAA CAAGGCCTTC GTGCGGCTGG TGTCGGTAAC CAACAAGCGC
GGCGCCATCA GCGCCAAGGT GGAGCTGCAT GTCAAGACCG CGAGCGGTGT GAAGCCCCAA
GAGGTCACTG TCGGTGACGG CGACGACTTG CAGCAAAGTA CCAAGCGCGC GGTCTACGCC
GACTTTCGTG TGGGCGAAAT CAACACGGCC AAGGGCGAAG AATTCCTGGA GCTGCGTTAT
CCCGGCGGCG AGGTCATGCT CGCCGTGGGC CAGGCCTACG GCGATGTCGA TGCCCTCGCC
GTGCAGCGCG AGATGATCCG GCGAACCATC CGCGAGCACC TGGAGAAGGA AAAACTTCTC
GGGCCGAAGG GCATCAAGGT GCTGTCGCTG TTCTTCATTG ACGCGGTGGA GCGCTACCGC
CAGTACGACA CGGAGGGCAA CCCGGTAAAG GGCGACTACG CCCGCATCTT CGAAGAAGAG
TATCGGCGCG CGGCCAAGCT GCCGGCCTAT CAGAGCCTGT TCGCTGAAAT TGACCTAGCC
AGTGCCGCCG AGGAGGTGCA CAACGGCTAC TTCTCCATCG ACAAGAAGGG TGGCTGGTCG
GACACGGCCG AGAACAACGC CGGCAACCGC GAGAACGCCG AGCGAGCATA CATCCTGATC
ATGAAGGAGA AGGAAAAGCT GCTGGACATC AAGACGCCGC TGAAATTCAT CTTCTCGCAC
TCGGCACTGA AGGAGGGCTG GGACAACCCC AACGTCTTCC AGATTTGCAC CTTGCGGGAA
ATCGGCACCG AGCGCGAGCG CCGGCAGACC ATCGGCCGTG GTCTGCGCCT GTGCGTGGAT
CAGCACGGCG AGCGCGTGCG CGGCTTCGAA GTCAACCGGC TGACGGTCAT CGCGACCGAG
TCCTACGAAC AGTTCGCCGA GAACTTGCAG AAGGAAATCG AGGCTGACAC GGGCATCCGC
TTCGGAATCC TGGAGCGGCA CCAGTTCGCG GCCATCGCCA TCAAGGCGGC GGACGGCACG
CTGGCGCCGC TGGGCGTTGA CCAGTCCAGG GCCTTGTGGG ATCACCTAAG AGCTGCCGGG
CATCTCGATG CCAAGGGCAA GGTGCAGGAC TCGCTGAAGG TGGCCCTGAA AAACGGCACC
CTGGCGTTGC CGCCGGCCTT TGAGGCCCAG CGCACGCAGA TTGCCGAGGT GCTACGCAAG
GTGTCCGGCC GGCTCGAAAT CAAGAATGCC GACGACCGCC GTGCGGTCCT GCTGCGCAAG
GGGGCGGACG GGAAGGCCGT GTACCTGTCC GAGGACTTCA AGGCGCTGTG GGACCGCATC
AAGCACCGGA CCACCTACCG GGTGCAGTTC GACAACGCCA AGCTGCTGCA AGACTGCACC
ACCGAACTGA AGAAGGCGCC GGCCATCGCG AAGGCCCGGC TGCAGTGGCG CAAGGCCGAC
ATTGCCATCG GCAAGGCCGG CGTGCAGGCC ACGGAAAAGG AAGGCGCTGC CACCATAGTA
CTGGATGAGA CCGACATCGA GCTTCCGGAC CTCTTGACCG ACTTGCAGGA TCGCACCCAG
CTCACCCGTC GCAGCATCGT CACCATCCTG ACCGAAAGCG GCCGGCTGAA TGAGTTCAGG
CGCAACCCGC AGCAGTTCAT CGAGCAGACC ACCGAGGTCA TCAACCGCTG CAAGCGCCTG
GCGCTGGTGG ACGGCATCAA ATACCAGAAA ATGGGCGATG ACCATTTCTA CGCCCAAGAG
CTGTTCGCCC AGGATGAGCT GACCGGCTAT CTGCGCAACA TGCTGCTGGA CACTGGCCGG
TCGATCTACG AGCACGTGAT CTACGACTCG GATACCGAAC GTGGCTTCGC TGACGCCCTG
GAGAAAAACG ACGGCGTGGT GCTCTACGCC AAGCTGCCTA GCTGGTTCAA GGTACCCACG
CCGCTGGGCC CATACAACCC GGACTGGGCC ATCCTGTTCG ACCAGGACGG CACCCAGCGT
CTATATTTCG TCGTTGAGAC GAAGAGTAGC CTGTTCGCAG ACGATCTGCG CGACAAGGAA
AGTGCCAAGA TCGAATGCGG CAGAGCGCAC TTTGCGGCAC TCGGTGTGGG TGAGAATCCA
GCGAAGTACC TCGTCGCCAC ATCCTTGGGC GATGTACTAA AGACTATGGC GTAG
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| Protein sequence | MKLHFEPNLD YQLQAIEAVC DLFRGQEACR TEFTVTMKLP DQQLTLGVAE TDLGVGNRLT
LLDDQLLQNL RDVQLRGGLA PSSMLASGDF TVEMETGTGK TYVYLRTIFE LNKRYGFTKF
VIVVPSVAIK EGVYKSLQIT EEHFKGIYAG VPVDFFLYDS GKLGQVRNFA TSSTIQVMVV
TVGAINKKDV NNLYKDSEKT GGEKPIDLIK ATRPIVIVDE PQSVDGGLTG AGKTALDAMN
PLCTLRYSAT HANKHHMVFR LDALDAYERK LVKQIEVAAA TIEDAYNKAF VRLVSVTNKR
GAISAKVELH VKTASGVKPQ EVTVGDGDDL QQSTKRAVYA DFRVGEINTA KGEEFLELRY
PGGEVMLAVG QAYGDVDALA VQREMIRRTI REHLEKEKLL GPKGIKVLSL FFIDAVERYR
QYDTEGNPVK GDYARIFEEE YRRAAKLPAY QSLFAEIDLA SAAEEVHNGY FSIDKKGGWS
DTAENNAGNR ENAERAYILI MKEKEKLLDI KTPLKFIFSH SALKEGWDNP NVFQICTLRE
IGTERERRQT IGRGLRLCVD QHGERVRGFE VNRLTVIATE SYEQFAENLQ KEIEADTGIR
FGILERHQFA AIAIKAADGT LAPLGVDQSR ALWDHLRAAG HLDAKGKVQD SLKVALKNGT
LALPPAFEAQ RTQIAEVLRK VSGRLEIKNA DDRRAVLLRK GADGKAVYLS EDFKALWDRI
KHRTTYRVQF DNAKLLQDCT TELKKAPAIA KARLQWRKAD IAIGKAGVQA TEKEGAATIV
LDETDIELPD LLTDLQDRTQ LTRRSIVTIL TESGRLNEFR RNPQQFIEQT TEVINRCKRL
ALVDGIKYQK MGDDHFYAQE LFAQDELTGY LRNMLLDTGR SIYEHVIYDS DTERGFADAL
EKNDGVVLYA KLPSWFKVPT PLGPYNPDWA ILFDQDGTQR LYFVVETKSS LFADDLRDKE
SAKIECGRAH FAALGVGENP AKYLVATSLG DVLKTMA
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