Gene Vapar_4588 details

Gene Information

• Locus tag: Vapar_4588
• ID: 7973286
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Variovorax paradoxus S110
• Kingdom: Bacteria
• Replicon accession: NC_012791
• Strand: -
• Start bp: 4857822
• End bp: 4859825
• Gene Length: 2004 bp
• Protein Length: 667 aa
• Translation table: 11
• GC content: 56%
• IMG OID: 644795173
• Product: putative methyl-accepting chemotaxis sensory transducer
• Protein accession: YP_002946460
• Protein GI: 239817550

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: n/a
• Fosmid unclonability p-value: n/a
• Fosmid Hitchhiker: n/a
• Fosmid clonability: n/a

Sequence

Gene sequence

ATGAACGAGA TCGTCATGGT GCTTGGACGC ATTCATCCTT CGCTTGCAAC CTTGCAGGGG 
ATGCCGCTCT ATGTCTTTCT GCTGGTTGGT TTCCTTACCG GTACCTTCCT ACTGGGTTAC 
GCAATCAAGG GCACTCAGGT TTGGTGGCAG CTTTGGTCGG TCGCGCGAAA GGTTCGTTCG 
TTCCGAAATG ACACTTCGCC TCCTTCGCCG CTTGATGTAG GGCGGGCATT CAAATGGGAG 
CCACTGAGAC ATCTGTGGGC GGAATATGCG GACACGCTCC ACGAGTTCCG TAAGGCTGGG 
TCGAGTGCGA TGACGCTCAC GGAAGTGCGT GCAACAGTGC CTGCGGAGGC AATGTTCACA 
CGTGAGGTGC TGGTGGATGG ACGGTTGTTT GATGATTTCA CCAGGCATCT TCCCGGCGTT 
CTGACTGGCC TCGGCATCAT CGGAACGTTC GCTGGCCTAC TCGATGGCCT TCGAGAGTTC 
AAGCCAACGC CTATTGAGGC AGCGGTCAAT GGTCTTGAGC CGTTACTGCT CGGTGTGCAG 
CACGCCTTTG TCGCATCTGG CGCGGCTATT GCCTGCGCAA TGGGCGTCGT CTTCCTCAGC 
CGATTTGTGC TCGCGTATCT TTATCGGTTA GTCGAGCACT TAACGCATGG CATAGACAGC 
TTGTATTCAA CGGGAGCCGG CGAAGAGTAC CTTTCCAGAC TCGTCAAGTC ATCGGAGCAG 
AACGCTGCCA CCACAGCGCA GTTGAAAGAC GCTCTTGTTG AGGATCTCAA CAAGATGATG 
ACGAATCTGG TGGAGCGTCA AATTGCAGCT CAAGAGGCCT CGGCTGTTGC CCTTGGAAAG 
CATATCGGAG ATAGCATTTC GCATGCTATC GCCGAGCCAA TGAAGCGCGT AGGTGAAGCA 
ATGGAAGTCA CTGCGAAGGG CAATGGTGAC CAAGTCAATT CCATGCTCGA GACGCTGCTC 
ACGGGATTCA TGGCCAAGCT GGAGGATACG TTCGGTGGGC AGATGCGGGG CATCAATGAG 
CAGATGCAGC GATCGATGGA CTCGATGGCT GCTGTACAAG CTTCGCTACA GGGTCTGCTC 
GCAGACATCA TGAAGACCAA CGAGCAGGCT GCAAGTCAGA TGAGCGGGAC ACTAGAGGAC 
GCCATGAGAA AGGCAGCTGA CAACCAGCAA TTACTGACAG ATCAGATGAG GGAATTTGTT 
CAGGATTTCC GGCGCCTTGT TACAGAGGAG CAGAGCAAGT CAAAGCAAGC CATGGATGAG 
GCAGTGATGA AGGTCCTGAG TGAAGTCGCA ATGTCCATGC AAAGTCTCGA AGGCCTGCGC 
AGGACTGCAG CGACGGAAGA GACTGGCCGT AACGATCGGT TGGCTGCCCA GACCAACCAG 
CTGGTCGGCG GACTGACGAC TCAGGTGGAG ACATTGCTGG GCACCGTTTC CGAGCAGGTC 
ACAAAGACCC AGCAGAATAT CGATGCGCTC GGGCAGGTTT CGCTTCGGGC GATCGATGGA 
ATGAACCAAG GAGCGCTGAC AATGGGCACC GCAGCTCAAC GCTTCGAGAC TGCGGGTGGT 
GCGGTCACGA CGGTGTTCGA CCGGTCCTCC AAGGTCGCCG ACACATTGGT TAGTGCTTCG 
ACATCACTCC AAGCCGCCTC GACCGCTGTT CAACGTGGGT TCGAACAGTA CGACTCCACG 
CGCAGGACTG TGGATGCACA AGTCGCCTCG CTGATTGGTC TCATCGAGTC CGCAAAGAAA 
GAGGCGGGGG TTTCTCAAGA GCTTGTGGCG AATATCAAGG CGAGCGCAGA CGCGATGCGC 
AAATCTGAAG CGGAGAGTCG AGAGCATTTG GACAGTGTGA ATGCCGCCCT CGTAAAGGCG 
TTCACGGATT TCGGAAACTC GCTCGTCGGC CAGGTCAAGT CCACCATTGC GGAGACAGAT 
CGGCATCTTG CACAGGGAAC CGGCCATCTG AACGGAGTGG TGCAGGAACT TGCCAATGCG 
GTTCAACGCA TGAAGAGGGC TTGA 

 

Protein sequence

MNEIVMVLGR IHPSLATLQG MPLYVFLLVG FLTGTFLLGY AIKGTQVWWQ LWSVARKVRS 
FRNDTSPPSP LDVGRAFKWE PLRHLWAEYA DTLHEFRKAG SSAMTLTEVR ATVPAEAMFT 
REVLVDGRLF DDFTRHLPGV LTGLGIIGTF AGLLDGLREF KPTPIEAAVN GLEPLLLGVQ 
HAFVASGAAI ACAMGVVFLS RFVLAYLYRL VEHLTHGIDS LYSTGAGEEY LSRLVKSSEQ 
NAATTAQLKD ALVEDLNKMM TNLVERQIAA QEASAVALGK HIGDSISHAI AEPMKRVGEA 
MEVTAKGNGD QVNSMLETLL TGFMAKLEDT FGGQMRGINE QMQRSMDSMA AVQASLQGLL 
ADIMKTNEQA ASQMSGTLED AMRKAADNQQ LLTDQMREFV QDFRRLVTEE QSKSKQAMDE 
AVMKVLSEVA MSMQSLEGLR RTAATEETGR NDRLAAQTNQ LVGGLTTQVE TLLGTVSEQV 
TKTQQNIDAL GQVSLRAIDG MNQGALTMGT AAQRFETAGG AVTTVFDRSS KVADTLVSAS 
TSLQAASTAV QRGFEQYDST RRTVDAQVAS LIGLIESAKK EAGVSQELVA NIKASADAMR 
KSEAESREHL DSVNAALVKA FTDFGNSLVG QVKSTIAETD RHLAQGTGHL NGVVQELANA 
VQRMKRA