| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4579 |
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| Symbol | |
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| ID | 7973277 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4839143 |
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| End bp | 4842682 |
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| Gene Length | 3540 bp |
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| Protein Length | 1179 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 644795164 |
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| Product | SMC domain protein |
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| Protein accession | YP_002946451 |
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| Protein GI | 239817541 |
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| COG category | [S] Function unknown |
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| COG ID | [COG4717] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGAAACTAT CGTCTTTGCA TCTGAAAGCC TTCGGCCCTT TCGCTGACCA TGTGGTCGAC
TTGGGCGGTC CCGGCAAGAG TCTGGTCTTG ATTTATGGCC CAAATGAGGC CGGCAAGTCG
GCGATGCTGC GCGCGATCGA GGCGCTGCGC TACCAGATCG ACCCGCGTTC TCCGGACAAT
TTCCGTCACG AACACCCCGA CATGAGCGTG GGTGCGACTC TCCTCAAACC TGATGGTACG
ACCGCCACGG TGATGCGGAT CAAACGTCCA AAGGACTCGC TACGCGTCGC ACGCGCCTTG
GGCGGTGGTC TGCTGGAAAC GACCGAAGCG CTTGCATCAT CAGGGATTCA GGAGGCGCTC
ACTGCAGGCC TTGGTCAAGA AGAGTACCGA CGTATGTTCG GGTTGAACCA CGAGACACTG
CGCGCAGGGG GGCAGCGGCT TGCTCGAGGA GAGGTGGAGC TCGGAACGTC CTTGTTCGAA
GCGAGCTTGG GCGTACGGGA CATAACCGCC ATCGCCCAGG ACCTGGACAA CCGTGCACGC
GAACTCTTTA TGCCTGGAGC GCGCGGCACC AAGGGAAAGA TCAATGAGGC GCTCAAGCGC
CATAAGGAAC TGCAGCGCGA GGTTAAGGAT GCGACGGTCA AACCGCGCGA CTGGCAAGAT
AGGTTCAATG CGAGCGAGCG TGCACGTCAG GATGTCCAGC GATTGGACGC AGAGCAGCGC
GCACTGAATT CTCGGCAAAG GCTGCTCGCA ACCTTGCGTG CTGCGGCACC GGCAATCCAG
GAGCTGGACG AGGCGCAGGC AACGCTGACT GAAATGAAGG AGACGCCCGA TTTGGTGGAG
GGGGCAGGTC AGGCGCGCAC CGCGGCGGAG GCTAGCCTGC TGGCGGCACA GGAAGCGCTC
GCAACCGCTC GGGCAATGGC CCAAGATGCT GAGTCTCGGC TGGACGCACT GGCGCCGGAT
CCGGCCGCGA TCGCGCACCG CGCCGCGATC GGCCGCCTGA TCGCTAAAGC CGAAGATGTG
GATACTCTGC GTCGTTCGAT CGCGCAGTTG GAAAAGCAGC ACACTGCGCA AGTGAGCGAG
GTCAGACAGA TGGCCGCGGC CATCAATGCC AGCGCCAATT CGGAGCAGGT GCTGGCTCGG
GCGCCGGCCA AGGCGCGCGG CGCGGAGGTC GAGCAGCGAG TGCAGGCATT CGTGGGCGCC
GAGCAGGCAC TCGACAACCA CACCCAATCC GCTCCCAAGG TGCAGGAGGA GGCCTCCGTC
GAGACGGAAG GCATGCCGCC GGAAGCGGCC ATCCGGCAAG TGCGCACCGT GCTTTCTGAC
CTGGAGCGCG GACGCAACAT CTTGTCGCGC CTGCGTGACC TTCCGGCTGA AATTGCAGAA
ACTAAGCGGG CGCTTGACGA TCAGTTGCAC GACTTGGGTC TGGAGGGAGA GGGAGCTTTG
GACTCGGTGA GGCCGGTGCT GGACGCCGAC ATCGACGCTG CGGCGCAGCG CCTTCAGGAC
AACGCATCTG CGCAACAAAA GCTACGCGAT CGCCTGACGC AGATCGAGCC AGAGCTGCGC
AGTGCTCGCG CCACCCGGGA CCGCATGCGC GGGGATCAGG CGGTGATAAC GCTGGATGAC
GTGGTGCAAG CCCGTGGCCA TCGCGACCAC CGCTGGCTGC TCGTGCGTGC TACCTACGTC
GACAATGGGG AGCATTGCGA TAGGGCTGTC GATCAGGCGG CTGCAACCGC CTCTGCAGAC
GGAAGCACGT TGCCCGAGGT GTACGAGCAG GCGGTTCGCT TGGCAGATGA ACGCGCCGAT
GGGTACGCGC GCGACACGAA GGCTGCGGCG GAGTTGAAGG CCAAGGAGGA AGAAATCGCA
CGCTATGAGC GCGATGAGCA GGCTCTCAGG GATGAACTGG CCCAACTGCA GGCGCAGGGT
AGGGCACTTT CCCAAGCCTG GATCCAACAG CTTCAGGCAC ACGGTCTGTT CGAGCACGCT
CCGTTGGCGC TTCGTGAATG GCAAGGTCTT CTCAAGCAGG CGCGCGAGGG GCGGGCGGCT
CTACAACGGC TGCGCAATGA ACAGCAGCAG GCGCTCGAAG TGGAAACGCG CCTGGCCTCT
GCGTTGCGTG CCGCGCTGCA GGCGATCGAT CCGGGATCGG CGCCGGGGCC AGAGCCGATT
ACCAGTCTGG AGACGTTAGT CCGTGAGCAG GAGGCCAGCA TACAGCGTCG GCAACGAGTT
GGTGATGACA GTCGCGCACG CCAGGCGTTG CTCGCAACGC AGGCGCGACA GTGGGAGGAG
CGGAAGGCCG AACTCGATCG GAAGCTAACC GATGCCCGTA CCCGCATGAA TGAGATTGCG
CAGGAGTGGT TGCTGCCCTT GGACGTATCG CCTTTGGCGA TCCGCGCGCG TATTCAGGAG
TTCACTGGCT TGCGAGACGC ACAGGCGAGG GCTGATGATC TCCAAGGGAA ACTTGAGCAG
GCCAATGCGA GCCTGGCACA AATCTTCGCT GACTCTCATG CGGTAGCGCC GGCGCTGGGC
CTGCAAGCAC CCCATGAAGC GCAGGCGTTG CGCCCTTGGT TCGATCAGCT GGAGCAGCGC
CGTATTTGTT CCGATGAGGT GCAGACAAAG CGGCAGGCAG CGCAGCGCGA TCTGTCCAAT
GCGGATACTG CTGTACGCAC TCAAGAGACA TTGATCGCCA AATACGAGAT CCAGCTGCGC
GGTATGTGCG AAGCCGCCGG TGTGGCAGAC GTGCGGCTGT TGCCCGGTGT CGAACTCCAG
GCGGAGCGAA AGCGCCAGGC GTCGACTGCA ACGCAGCGCT GTCTGCAGCA GTTACGCGTC
GCTTCAAACC TGACGCTGGA AGAACTACGA GAGCAGTTGG CCGCGCAAGA CGGCGCGGCG
CTCCTGGCGC AGGAAGAACA GTGCGTCAGG AATCTTGAGG AGGTCGCGCC CAAGCTGGAG
GCTGCGCGCG TAGATGCCGA GCGGACCCGA CGCGAATTGG AGGCGGTCGA CGCTTCGGGA
GCGGCAGCGC AGGCGCAGGA AGATCTGTGT CAAGCCACAG CAAGCATAGA GTCGAGCCTG
CGTCCATGGA TGCGATTGCG TCTGGCACAT AGCTTGTTGA TGCAGGCCCA GCGTAGATTC
CAAGAGCGCG CGCAAGGGCC TATGTTGGAA CGCGCGAGCG GGTACTTCCA GCGAATGACT
GGTGGAGCGT TCACTCGATT AAAGGCCGAT GTCCTGGCGG ACAAACAGGT GCTGCTGGCG
GAGCGCGCGC AGGGCGGCGC CATCGGCACC GAAGCTATGA GCGAAGGCAC GCGGGATCAG
CTGTATTTGG CGCTTCGCTT GGCTGCGGTC AGCCTGCGGC GCGATGCAGG GGTGAATCTG
CCGATGGTGC TGGACGATGT ACTCATGACC TCCAGCGATG GCCGTGCCGG CTTTGTGCTG
CAGGCACTGT CGGACTTCTC GCAAGGCAGC CAGGTAGTTG TATTTACCCA CCATGAGCAC
TTGCTGGAAG TCGCGCGCCG CGCGGTTCCC TCAGATGTGC TGCAGGTCGC CGGCCTTTAG
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| Protein sequence | MKLSSLHLKA FGPFADHVVD LGGPGKSLVL IYGPNEAGKS AMLRAIEALR YQIDPRSPDN
FRHEHPDMSV GATLLKPDGT TATVMRIKRP KDSLRVARAL GGGLLETTEA LASSGIQEAL
TAGLGQEEYR RMFGLNHETL RAGGQRLARG EVELGTSLFE ASLGVRDITA IAQDLDNRAR
ELFMPGARGT KGKINEALKR HKELQREVKD ATVKPRDWQD RFNASERARQ DVQRLDAEQR
ALNSRQRLLA TLRAAAPAIQ ELDEAQATLT EMKETPDLVE GAGQARTAAE ASLLAAQEAL
ATARAMAQDA ESRLDALAPD PAAIAHRAAI GRLIAKAEDV DTLRRSIAQL EKQHTAQVSE
VRQMAAAINA SANSEQVLAR APAKARGAEV EQRVQAFVGA EQALDNHTQS APKVQEEASV
ETEGMPPEAA IRQVRTVLSD LERGRNILSR LRDLPAEIAE TKRALDDQLH DLGLEGEGAL
DSVRPVLDAD IDAAAQRLQD NASAQQKLRD RLTQIEPELR SARATRDRMR GDQAVITLDD
VVQARGHRDH RWLLVRATYV DNGEHCDRAV DQAAATASAD GSTLPEVYEQ AVRLADERAD
GYARDTKAAA ELKAKEEEIA RYERDEQALR DELAQLQAQG RALSQAWIQQ LQAHGLFEHA
PLALREWQGL LKQAREGRAA LQRLRNEQQQ ALEVETRLAS ALRAALQAID PGSAPGPEPI
TSLETLVREQ EASIQRRQRV GDDSRARQAL LATQARQWEE RKAELDRKLT DARTRMNEIA
QEWLLPLDVS PLAIRARIQE FTGLRDAQAR ADDLQGKLEQ ANASLAQIFA DSHAVAPALG
LQAPHEAQAL RPWFDQLEQR RICSDEVQTK RQAAQRDLSN ADTAVRTQET LIAKYEIQLR
GMCEAAGVAD VRLLPGVELQ AERKRQASTA TQRCLQQLRV ASNLTLEELR EQLAAQDGAA
LLAQEEQCVR NLEEVAPKLE AARVDAERTR RELEAVDASG AAAQAQEDLC QATASIESSL
RPWMRLRLAH SLLMQAQRRF QERAQGPMLE RASGYFQRMT GGAFTRLKAD VLADKQVLLA
ERAQGGAIGT EAMSEGTRDQ LYLALRLAAV SLRRDAGVNL PMVLDDVLMT SSDGRAGFVL
QALSDFSQGS QVVVFTHHEH LLEVARRAVP SDVLQVAGL
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