| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4578 |
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| Symbol | |
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| ID | 7973276 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4837303 |
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| End bp | 4838886 |
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| Gene Length | 1584 bp |
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| Protein Length | 527 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 644795163 |
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| Product | protein of unknown function DUF88 |
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| Protein accession | YP_002946450 |
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| Protein GI | 239817540 |
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| COG category | [S] Function unknown |
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| COG ID | [COG1432] Uncharacterized conserved protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.975373 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | GTGAAGATTG CCTTATTCGT CGATTTCGAC AATGTGTACT CAGGCCTGCG ACGAATCAGT
GCCGAAGCCG CTGAACGATT CTCGCGCCAG CCATTGCGGT GGCTGAGCTG GCTCACGACA
GGGGCTGACG GCGAGAACAT CGACGATACG TCTCGCGATC GACGCCGTGT GCTCGTACGG
CGCTGTTACC TCAATCCTGT CATGTACCAA AAGTACCGCC GACCGTTCCA CGAGGCAGGC
TTCGAGATTG TGGACTGCCC ACCAATGACG GCCACTGGCA AGACATCGAC AGACATCCAC
CTGGTGCTCG ACACGATGGA CGCCCTATTG GATGACACAC ACTTCGACGA GTTCATCGTT
TTCTCCGCAG ATGCCGATTT CTCGCCGGTG CTGCGCCGCC TGAGGCGGCA TGACCGACGC
ACGGTCGTCT TTGCCGCTGG CGCCATGTCG GAATCGTACA AGGCGTCCGC AGACCGCGTC
ATCGATATTC AAACCTTCCT CCACGATGCC TTGGAACTTC CTTCTGCCGA GGACGAGGAC
GAGGAGGAGT TGCCGATGCA TATTGCTCCC CCTGTCGACG CCGCAGCGAC CGCAGATCTC
CGCAGGCGCC TTGCGGATCA GGTCCGCAGC ATCGTCCTCA AAGCCGAATT GCCTGTCCGG
CTTCCTGCGT TGGCGCAGTC TCTCCAGCGC GAAAATGCAG GCCTGCGTGA GGGACTGTGG
GACGGTGCGG GGTCTTTTGG GAATCTGATG CGGCAGCTGG GTATACCGGA AATCCAGTTC
GACTTCCCGA ACGCTGTCGC TATCGATCTA CAGCGAATGG GCGAGTGGCG CGCGGCAGAT
GCGACCCGCC AAACAAACCC ACTCCCGCCA GCGAGTGCAA TCGAGGAAAC AGCACAGATC
GAAGCCGAAG CGCCTTCGCA GCAGTTGCCC CCAACGGAGC TAAAAGGCGC TGCGGAGGAG
ATCGTGAAAC GCTCTGTAGC CGAATCGAAG ACCCCTGTCC ACCTCGCAGT GCTTGGGCAA
GTGCTTCGCC GACGACTGCC GCAATTGGCC ACCGGGTGGG CGGGAGCGCC TACTTTGGCG
GCGTTCTTAC AGCAGCTGAA CATCGAACCT TTGCAACGCG CCCTGTTGGA CAACGGTACG
ACAGCTGTAC TCTACGACCC AGCAAGGCAC GAGCCTCCAG CGGGAGTAGT CGGAGACCGA
TTAGTGATCG GCATGTTGCG CGCCGCCGAG TTACCAGAGA TGAGAGGTGC GGACCTCGTC
CGCATCTTGG AAAACTCGCG GCAGCACATG GGCACCGCCG AATCGTTCGA GATCGCCAAA
GTCAGTCGCA GCGTAGCCAT CTCAATGACG GGAGACGGAT TTTCGATTTC GCCACGTCGA
GTGGCCACCG TTCTGCAGGC AATGATCTTC GGGGGACTCG ACGCGACAAA AGCATATGCG
CGGGCACAGG ATCTCATCGT CGCGTCGATG GGCGTCATCC TGTCGGCTTG GGCGCGGGAA
ACGCAAGTCC AGCCCGATGA CGACGCAAGA GGCCGCTTAC TGGCTTGGCT GGGCCCTACC
TCGGAGATCT TGATCCCGGA GTGA
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| Protein sequence | MKIALFVDFD NVYSGLRRIS AEAAERFSRQ PLRWLSWLTT GADGENIDDT SRDRRRVLVR
RCYLNPVMYQ KYRRPFHEAG FEIVDCPPMT ATGKTSTDIH LVLDTMDALL DDTHFDEFIV
FSADADFSPV LRRLRRHDRR TVVFAAGAMS ESYKASADRV IDIQTFLHDA LELPSAEDED
EEELPMHIAP PVDAAATADL RRRLADQVRS IVLKAELPVR LPALAQSLQR ENAGLREGLW
DGAGSFGNLM RQLGIPEIQF DFPNAVAIDL QRMGEWRAAD ATRQTNPLPP ASAIEETAQI
EAEAPSQQLP PTELKGAAEE IVKRSVAESK TPVHLAVLGQ VLRRRLPQLA TGWAGAPTLA
AFLQQLNIEP LQRALLDNGT TAVLYDPARH EPPAGVVGDR LVIGMLRAAE LPEMRGADLV
RILENSRQHM GTAESFEIAK VSRSVAISMT GDGFSISPRR VATVLQAMIF GGLDATKAYA
RAQDLIVASM GVILSAWARE TQVQPDDDAR GRLLAWLGPT SEILIPE
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