Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Vapar_4569 |
Symbol | |
ID | 7973267 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Variovorax paradoxus S110 |
Kingdom | Bacteria |
Replicon accession | NC_012791 |
Strand | - |
Start bp | 4824145 |
End bp | 4827654 |
Gene Length | 3510 bp |
Protein Length | 1169 aa |
Translation table | 11 |
GC content | 65% |
IMG OID | 644795154 |
Product | exodeoxyribonuclease V, gamma subunit |
Protein accession | YP_002946441 |
Protein GI | 239817531 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG1330] Exonuclease V gamma subunit |
TIGRFAM ID | [TIGR01450] exodeoxyribonuclease V, gamma subunit |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | n/a |
Fosmid unclonability p-value | n/a |
Fosmid Hitchhiker | n/a |
Fosmid clonability | n/a |
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Sequence |
Gene sequence | ATGACCCATC ACATCGAACC AGGTCTGTTA GTCCTGCATA GCAACCGAGC CGAATGGCTG GCAGACGCTG TCTTCCAGTG GATCGCCCGC CAACCGTTGC AGCCGCTGGA GGAGGAGGTA TTCCTCGTCC AAAGCAATGG TGTTGCTGAA TGGCTCAAGA TGGCAATGGC CACGCACAGG GGGGTGTGTG CTGCCGCTCG CGTCGAATTG CCCGGCCGTT TCTTGTGGCG AGCGTACCGA CAGGTGCTGG GCCGCGATGC CGTGCCAGCG CAATCGGTAC TCGACAAGCT ATCGATGACG TGGCGGTTGA TGGAGCTGCT GCCCGCGGTG ATCCAGCGGG CCGGCTTCGA GCCGTTGGCA CGCTTTCTTG CCGACGGTGC CGTGCCGCGA CGACTCCAAC TGGCCGAGCG ACTCGCCGAC CTATACGACC AGTACCAAGT CTACCGTAGC GACTGGCTGA CCGCATGGGA GGCGGGGGCG GACATCCTTC CGCGCACCGC GACCAGCATC GCAGCCGGTG CACCGCCGCT TGAGGCGGAC CAGTTGTGGC AGGCCGCCTT GTGGCGCGAA CTGCTCTCTA CCCTGGACGA CGGAGAGCGT GGTGCCATCC GCTCCCGTTT GCACAGCCGC TTTACCACCG CGCTGCAGAC CCCGACAGGC CTGGCGATGC CTGTGGCGCG GCGCGTGGTC TTGTTCGGCA TGACCCACGT TCCGATGCAG ACGCTCGAAG CCCTTTCGGC GCTCGCCACG CATTCGCAAG TGGTGCTGGC CATTCCCAAT CCGAGTCAAT ATCACTGGGC CGACATCATC GAGGGGCGGG AGCTGCTTCG GATCGAGCGA CGTCGGCAGC CGCTGCGCAA CGGACAGGAC CTTGCGGCCG TTCCGATGGA GGATATGCAT GCACACGGCC ATCCTTTGCT GGCCGCGTGG GGCCGGCAGG GGCGCGACTT TGTTCGGCAA CTCGATGCAT TCGACGATGC GGAGGCTACG CGGCAGCGCT TTGCGGGGCT CAAGATCGAC CTCTTCGACA CGCAGCCGGG TGTGAGTCTT CTGCAGCAGG TTCAGGCGGG CATCCGGGAC TTGGAACCTT TGCAGGATCC GCCCCGCGCG TCCGTCCCCG CGACCGATCG GTCAATTGTC TTTCACGTCG CTCATAGCAC ACAGCGCGAA GTCGAAATCC TGCACGACCA GTTGCTAGCG TTGCTCGCTG CACCGGTCCG CGGTCCAGAC GCCCCGTCTC TGCAGCCGCG CGATGTCGTA GTCATGGTGC CGGACATCGC CGCGTTCGCG CCTGCCATCC GATCGGTGTT CGGTCAATAC CGGCGCGGCG ATCCGCGCTT CATTCCTTTT GATATCGCCG ATTTGCAGGA GCGTGGGAAC AACCCGGTGC TGGTGGCGAT GGAGTGGCTG CTGCGCCTGC CACAGCAACG TTGCCGCGCG AGCGAGGTCC GGGATCTACT GGATGTGCCC GCTGTCGCGC AGCGCTTCGA TTTGGACAAC GCCGACCTGC CACGGCTGGC GCAGTGGATG GAGGGCGCCG GTATTCGCTG GGGTCTGGAT CTGGCCCACC GCAACGAATT GGAGTTGGCT GCCTGCGGAG AACAGAACAC ATGGATGTTT GGCCTGCGAC GCATGCTGCT TGGCTTCGCT GGCGGCCCCG GCGCTCGGGC GTTCCAGGGG GTCGAACCGT ACGCAGAGGT TGGAGGGCTC GAGGCGTCGT TGGCCGGATC GCTGGCTGAC GTGCTGGACG CACTGGTGCA GTGGTGGCAA GAGGCCGCAT CCGAGGCCAC ACCTGTGCAA TGGGGGGCGC GCGTGCGGGC GCTGCTCGAT GCCTTCTTCG CCGCCACCAA TGAACGCGAA CGGATCACGC TGGCCTCGGC TCGCGATGCC TTGCGCGACT GGCTCTCTGC CTGTGACACC GCCGGCTTCG ACCAATGCGT GCCCCTGGAA GTAGTGCGCG AAGCCTGGCT GACGGGTATT GACGCACCAA ATCTGCATCG GCGCTTCCGC GCTGGTGGGG TGACCTTCTG CACGTTGTTG CCTATGCGCG CAGTGCCATT CGAAGTGGTG TGCCTGCTCG GCATGAACGA CGGCGACTAC CCGCGAAGCA GCACACGCAG CGACTTCGAC CTGATGGGGC TGCCGGGCCA GCGCCGGCCC GGCGACCGCT CGCGACGGGA CGACGACCGC CAATTGATGC TGGAGGCATT GTTGTCGGCG CGGCAGGTCT TCTACGTGAG TTGGGTCGGG CGCAGCGTGC GAGATAACAG CGTACAGCCG CCTTCCGTGC TGGTGTCGCA ACTGCGCGAT TTCCTGCAAG CCAATTGGAG CAGCGACTTG GCGGCCGCAC GTACCACCGA GCACCCATTG CAGCCTTTCA GCCGTCGCTA CTTCGAGGTG CCGGCGTTGT CCGATCCTGC AAAGAAGGGG GATGCCCTGT TCACGTTCGC CCGCGAATGG CGTGCCGCCC ACACGGGCGA TTCGGGCATC GACGTTGCGG AGCCGCGGAT GCCCGTGACT GACTCACAGG TTGTGCCGCG ATTGACGGTG GCGATGTTGA CCAGTTTTTT GAAGAACCCC GTCAAGCATT TCTTTCGGCA GCGGCTCAGC GTGGTGTTCG CGGAGGAGGA TCAGGCATCC GCGGATGACG AGAACTTCGG ACTTGACGGG CTGGAAGAAT ATGGGCTTTT GGCGCAGGTC GTGGCCGAAA TAGGAGCGGC TTCCCTCCCG GCGCCGGACG ATCCCACCAC GCTCACCGGG CAAGTGAATG AACTCATGGC TCGCATCAAG CGTGCCGGTC AATTGCCCAT GGCCGAGATC GGGCGCCGCG CTGAGCAAGG TCTGGTCGAG GCAGCCTTGC CCATGCTCGC GCAGTGGCGT GCCGTACTGG CCGAGTATCC CGAGCCGGCT GCCAAGGCGC CACTGCGACT CACCGAAGAC GCGGTGACGA TCGACGACTG GCTGGACGGC CTGCGTAGTG CCCCGCTTAA CGCTGACGCG CGCATCTGGC TGGAACTCGT GCCGTCGCGT CTGCAAACCA CCGCGAAGAT GCCCGAGCTG CGCCTTGAGC AACTGATCCA GCCGTGGGTG CGCAGCTTGG TGGCAGGCGC CTGCGGCATT GCCGCGCATG GCGTGCTGGT TGGGCGTGAC GCGAGTGTGA TCATCACTCC GATGGCTCAG GAAGCCGCAC GAGCGACGCT TGCCGTTTTG CTAGCAGGCT GGCGCCAGGG TATGACCCAA CCGCTCCCGG TCGCCTGCCG TACCGCCCTC GCATGGCTCA ACCAAAAGGA TGCGGGCCTG AACTATGAAG GTAATGGTGA CTTTATGCGG GGCGAGCGCG AGGAAGCGTG CCTGGCGCGC GAGTACCCCG ATTACGAGGC CCTGACGGCT GATGGTCAGT TTGAACTCTG GGCCGAGCAA CTCTACGGTC CGGTTGTGCA CTGGATCGCG GCCCACGTGA CCGTCGAATC GCATGTGGCC GCTCAAACCC GCCGTGAGGT TGCCATCTGA
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Protein sequence | MTHHIEPGLL VLHSNRAEWL ADAVFQWIAR QPLQPLEEEV FLVQSNGVAE WLKMAMATHR GVCAAARVEL PGRFLWRAYR QVLGRDAVPA QSVLDKLSMT WRLMELLPAV IQRAGFEPLA RFLADGAVPR RLQLAERLAD LYDQYQVYRS DWLTAWEAGA DILPRTATSI AAGAPPLEAD QLWQAALWRE LLSTLDDGER GAIRSRLHSR FTTALQTPTG LAMPVARRVV LFGMTHVPMQ TLEALSALAT HSQVVLAIPN PSQYHWADII EGRELLRIER RRQPLRNGQD LAAVPMEDMH AHGHPLLAAW GRQGRDFVRQ LDAFDDAEAT RQRFAGLKID LFDTQPGVSL LQQVQAGIRD LEPLQDPPRA SVPATDRSIV FHVAHSTQRE VEILHDQLLA LLAAPVRGPD APSLQPRDVV VMVPDIAAFA PAIRSVFGQY RRGDPRFIPF DIADLQERGN NPVLVAMEWL LRLPQQRCRA SEVRDLLDVP AVAQRFDLDN ADLPRLAQWM EGAGIRWGLD LAHRNELELA ACGEQNTWMF GLRRMLLGFA GGPGARAFQG VEPYAEVGGL EASLAGSLAD VLDALVQWWQ EAASEATPVQ WGARVRALLD AFFAATNERE RITLASARDA LRDWLSACDT AGFDQCVPLE VVREAWLTGI DAPNLHRRFR AGGVTFCTLL PMRAVPFEVV CLLGMNDGDY PRSSTRSDFD LMGLPGQRRP GDRSRRDDDR QLMLEALLSA RQVFYVSWVG RSVRDNSVQP PSVLVSQLRD FLQANWSSDL AAARTTEHPL QPFSRRYFEV PALSDPAKKG DALFTFAREW RAAHTGDSGI DVAEPRMPVT DSQVVPRLTV AMLTSFLKNP VKHFFRQRLS VVFAEEDQAS ADDENFGLDG LEEYGLLAQV VAEIGAASLP APDDPTTLTG QVNELMARIK RAGQLPMAEI GRRAEQGLVE AALPMLAQWR AVLAEYPEPA AKAPLRLTED AVTIDDWLDG LRSAPLNADA RIWLELVPSR LQTTAKMPEL RLEQLIQPWV RSLVAGACGI AAHGVLVGRD ASVIITPMAQ EAARATLAVL LAGWRQGMTQ PLPVACRTAL AWLNQKDAGL NYEGNGDFMR GEREEACLAR EYPDYEALTA DGQFELWAEQ LYGPVVHWIA AHVTVESHVA AQTRREVAI
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