Gene Vapar_4548 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagVapar_4548 
Symbol 
ID7973246 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameVariovorax paradoxus S110 
KingdomBacteria 
Replicon accessionNC_012791 
Strand+ 
Start bp4805643 
End bp4806221 
Gene Length579 bp 
Protein Length192 aa 
Translation table11 
GC content58% 
IMG OID644795134 
ProductHNH endonuclease 
Protein accessionYP_002946421 
Protein GI239817511 
COG category[V] Defense mechanisms 
COG ID[COG1403] Restriction endonuclease 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value1 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clonesn/a 
Fosmid unclonability p-valuen/a 
Fosmid Hitchhikern/a 
Fosmid clonabilityn/a 
 

Sequence

Gene sequence
ATGTCAGACG AGACCAAGAA GTGCAGCACC TGCGGCAGCA TTTTCCCGCT AACACGGGAG 
TTCTACGGGC AGCAGGCCTC GACTGGTGGT TTCCGCGGCA GATGCCGGGT TTGTGACAGG 
GATGCGAAGG CGCGATATGC CGAGAACAAC CCAGACCAAA TTCAGGAAAA GTGGCGGCGC 
CAGAACGCCA GACGAAAGGC CGCCGGGCTG CCTTGGTCAC AGGACGATGT GGCTGTCATT 
CGCGCAAGAC TGCGGGACCG ATGCTTCTAC TGTGGAGTAA CCCTATTCGG TGGCGGGGAG 
GTCGATCACA TGACCTCTCT TGCGGAAGGC GGTACCAACG AATTCCGTAA CCTCACCCTG 
GCGTGCTTGC CTTGCAACAG AGCAAAAGGA AGCCTCGACG CCAGGGCGTA CATCGAGTGG 
AGGAAGTCTC GTGGAGAGTA TTGCCGGGAC ATTTTTTGGC CCACCCAGGA GGACTTGGGC 
GATATTCAGC AGGCCATCGA GACTCTGAGG CTGACCCTTG AGTGCAAGAC TGACAAGCGG 
CCAACAGGCG CAAAGATTTT GGCGTTCAAA CGCCGATAG
 
Protein sequence
MSDETKKCST CGSIFPLTRE FYGQQASTGG FRGRCRVCDR DAKARYAENN PDQIQEKWRR 
QNARRKAAGL PWSQDDVAVI RARLRDRCFY CGVTLFGGGE VDHMTSLAEG GTNEFRNLTL 
ACLPCNRAKG SLDARAYIEW RKSRGEYCRD IFWPTQEDLG DIQQAIETLR LTLECKTDKR 
PTGAKILAFK RR