| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4536 |
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| Symbol | |
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| ID | 7973234 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4794362 |
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| End bp | 4797484 |
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| Gene Length | 3123 bp |
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| Protein Length | 1040 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 644795122 |
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| Product | DNA polymerase III, alpha subunit |
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| Protein accession | YP_002946409 |
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| Protein GI | 239817499 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0587] DNA polymerase III, alpha subunit |
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| TIGRFAM ID | [TIGR00594] DNA-directed DNA polymerase III (polc) |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.183295 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGAACTGC CCGACTACGC CGAGCTGCGG TGCGTGAGCA ATTTCAGCTT CCTGCGCGGC
GCGAGCCAGC CGGACGAGCT CGTCGAGCGC GCGAAGCAGC TGGGCTACGC GGCGCTGGCC
CTCACCGACG AGTGCAGCCT GGCCGGTGTC GTGCGTGCCC ATGTGGCAGC GAAGGACCAC
GACCTCAAGC TGCTGATCGG CAGCCAGTTC CTCGTCGAGC CCGATGCAGA GCTCGACCCG
GAGGCCGCGC CCTTCACGCT TACGGTGCTG GCTTGCGATC TCGATGGCTA CGGCAACCTC
TCGGCGTTCA TCACCAAGCT GCGGCGCAGC TCCGAGAAGG GCACCTACAA GCTGCCGCTC
GCGCAGATCC GCGGCGCCGA ACTCGCCGGT TGCGTGGTGC TGGCCTCGCC CAGGCGCATG
GCCACGCCGG CGCAGCTGGG CTGGCTCGGC GCCTGGCTGC TGCGTGAGTT CCTCGGGCGC
TGCTGGTTCG CCGTGGAGAA GCTGCGCCTG CTCGATGACG AGATGTGGCT GCACCGCCTG
GGCGAGGTCA GCGCGGCGAC CGAGATTCCG CTGGTGGCCG CGGGCGACGT GCATTTCCAT
GTGCGCTCGC GCAAGCCGCT GCAGGACGTG ATGACCGCGA CGCGCCTGGG CAAGCCGCTG
ACGGACTGCG GCCTTGAACT GCAGCCCAAC GCGGAGCGGC ACTTGCGCAC CCGGCTGCGG
CTCGCGCAGA CCTATGCCCC CGAGCTGCTC GCGGAGACGC TCAAGGTGGC CGCGCGCTGC
AGCTTCAATC TTGAGGAGCT TCGCTACCAG TACCCCGACG AGGTGGTGCC CGCGGGCGAG
ACGCCCGCCG GCTACCTGCG CCGCCTCACC TACGAGGGAG GAGGGCGTCG CTGGCCCGAT
GGCATTCCCG CCAAGGTCCA GGCGCAGATC GAGCACGAGC TCGCGCTGAT CGCCGAGCTG
AAGTACGAGC ACTACTTCCT CACCGTGGCC GACATCGTGA TGTTCGCGCG CGCGCGTCAC
ATCCTCTGCC AGGGCCGCGG CAGCGCCGCC AACAGCGTGG TCTGCTACTG CACGGGCGTC
ACCGAGGTCG ACCCGGGCCG CATGAGCGTC CTGTTCGAGC GCTTCATCTC GAAGGAGCGC
AACGAGCCGC CGGACATCGA CATCGACTTC GAGCACGAAC GGCGCGAGGA GGTGCTGCAG
TACCTCTATG CGAAGTACGG GCGCGACCGC GCCGCGATCA CCGGGGTCGT GATCAGCTAC
CGGCCGAAGA GCGCGATCCG GGACGTGGGC AAGGCACTGG GGATGTCGCT GGAGACGGTG
GACGCCCTCG CCAAGGGGCA CCAGTGGTGG GACGGGGGGG CGGTGCGGCC CGAGCGCCTG
CAGGAGCTCG GCCTGGCTGC GGATTCACTG CAGGTGCAGC AGCTGCTGCA CCTGACCGAG
CAGCTGATCG GCTTTCCGCG GCACCTGAGC CAGCACACGG GCGGCTTCGT GCTCACGAAG
GGGCCGCTGT GCCGCATGGT GCCGATCGAG AACGCCTCGA TGCCCGACCG CACCGTGATC
GAGTGGGACA AGGACGACCT CGACGCGCTC GGGTTGCTCA AGGTGGACTG CCTCGCGCTC
GGCATGCTGA CGGCGATCCG CAAGGCGCTG GACTTCATCG GCCTGCGCAA GGGCTGCGTG
TTCGGCATGC AGGACATCCC GGCCGAGGAC AGCGCCACCT ACGACATGAT CTGCAAGGCT
GACACCATCG GCGTGTTCCA GATCGAGAGC CGCGCGCAGA TGAGCATGCT GCCGCGGCTG
AAGCCGCGCT GCTTCTACGA CCTGGTCATT GAAGTCGCGA TCGTGCGGCC GGGTCCGATC
CAGGGCGGCA TGGTGCACCC GTACCTGAAC CGGCGCCAGG GCCGGGAGCC GGTGGTCTAC
CCGAGCGAGG CGCTCAAGGA AGCACTCGGA CGGACCCTGG GCGTGCCGGT GTTCCAGGAG
CAGGTCATGC AGATCTCGAT CCTGGCGGCG GGCTTCACGC CGGGCGAAGC CGACGGCCTG
CGGCGCTCGA TGGCGGCGTG GAAGCGCAAG GGCGGCCTGG AGCACTACCA CGCGAAGATC
GTGGACGGCA TGACCGCGCG CGGCTACGAG GAGAGCTTCG CGAAGGCGAT CTTCGAGCAG
ATCAAGGGGT TCAGCGAGTA CGGTTTTCCG GAAAGCCATG CCGCGTCGTT CGCGCTGCTG
GTCTACGCGA GCTGCTGGAT CAAGTGCCAT CACCCGGCGG AGTTCCTCGC GGCCATGCTG
AACTCGCAGC CGCTCGGGTT CTATTCGCCG TCGCAGCTCG TGCAGGACGC GCGGCGCCAT
GGCGTCGAGG TGCGGCCGGT CGACGTGATG TACAGCGACG TGGACTGCAC CCTGGAAGAC
CTGGCGCACG AACCGGCCGT GCGGCTCGGG CTGCGCATGA TCGGCGGGCT CAAGTCGGCC
TCGGCCGGCC GCATCGTCGA GGCCCGCGTG CAGCAGGTGT TCGACAGCAC GGAGGACCTG
GCGCTGCGCG CGCGGCTGGA ACTGCACGAG ATGAAGCTGC TGGCCGCGGC CGACGCGCTC
GCGAGCCTGT CGGGCCATCG GCGCCAGCAG GTCTGGGAGG CGGCGGGGCT GCGCGCGGCA
CCCGGGTTGC TGCGCGAGGT GCCGGTCGAC GAGGATTTTC TGGGACTCGA CGCGGCCCCC
GAGGGCGAGG AAATCGTGTT CGACTATGCG TCGACCGGAC TGACCTTGCG CCGGCATCCG
CTCGCCTTGC TGCGCGAGCG CCTGGCGCTG CGCGGCCTGA TGACGGCGCG GGACCTCGAC
GAGATCGAGA ATGGGGAACA TGTGAGCCAC TGCGGCATCG TGACGTTGCG CCAGCAGCCG
GAGACCGCGA AGGGCACGAT CTTCGTGACG CTGGAAGACG AGACGGGCGT GGTGCAGGTG
ATCGTCTGGA AGAGCCTCAG GGACGTGCAG CGCGAGGAAC TGCTGGGCGC GCGGCTCATG
GCCGTGCACG GCAGGTGGCA GCGCGAGGGG GCGGTGAAGA ACCTGGTCGC GACGCGGCTG
GAAGATCTGA CGCCGCTGCT GGGGCGGTTG GCGGGGGCGA CGGTGAGCCG GGATTTCCGG
TAG
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| Protein sequence | MELPDYAELR CVSNFSFLRG ASQPDELVER AKQLGYAALA LTDECSLAGV VRAHVAAKDH
DLKLLIGSQF LVEPDAELDP EAAPFTLTVL ACDLDGYGNL SAFITKLRRS SEKGTYKLPL
AQIRGAELAG CVVLASPRRM ATPAQLGWLG AWLLREFLGR CWFAVEKLRL LDDEMWLHRL
GEVSAATEIP LVAAGDVHFH VRSRKPLQDV MTATRLGKPL TDCGLELQPN AERHLRTRLR
LAQTYAPELL AETLKVAARC SFNLEELRYQ YPDEVVPAGE TPAGYLRRLT YEGGGRRWPD
GIPAKVQAQI EHELALIAEL KYEHYFLTVA DIVMFARARH ILCQGRGSAA NSVVCYCTGV
TEVDPGRMSV LFERFISKER NEPPDIDIDF EHERREEVLQ YLYAKYGRDR AAITGVVISY
RPKSAIRDVG KALGMSLETV DALAKGHQWW DGGAVRPERL QELGLAADSL QVQQLLHLTE
QLIGFPRHLS QHTGGFVLTK GPLCRMVPIE NASMPDRTVI EWDKDDLDAL GLLKVDCLAL
GMLTAIRKAL DFIGLRKGCV FGMQDIPAED SATYDMICKA DTIGVFQIES RAQMSMLPRL
KPRCFYDLVI EVAIVRPGPI QGGMVHPYLN RRQGREPVVY PSEALKEALG RTLGVPVFQE
QVMQISILAA GFTPGEADGL RRSMAAWKRK GGLEHYHAKI VDGMTARGYE ESFAKAIFEQ
IKGFSEYGFP ESHAASFALL VYASCWIKCH HPAEFLAAML NSQPLGFYSP SQLVQDARRH
GVEVRPVDVM YSDVDCTLED LAHEPAVRLG LRMIGGLKSA SAGRIVEARV QQVFDSTEDL
ALRARLELHE MKLLAAADAL ASLSGHRRQQ VWEAAGLRAA PGLLREVPVD EDFLGLDAAP
EGEEIVFDYA STGLTLRRHP LALLRERLAL RGLMTARDLD EIENGEHVSH CGIVTLRQQP
ETAKGTIFVT LEDETGVVQV IVWKSLRDVQ REELLGARLM AVHGRWQREG AVKNLVATRL
EDLTPLLGRL AGATVSRDFR
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