| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4502 |
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| Symbol | |
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| ID | 7972791 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4753363 |
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| End bp | 4754235 |
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| Gene Length | 873 bp |
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| Protein Length | 290 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 644795092 |
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| Product | integrase family protein |
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| Protein accession | YP_002946379 |
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| Protein GI | 239817469 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG4974] Site-specific recombinase XerD |
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| TIGRFAM ID | [TIGR02249] integron integrase |
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Plasmid Coverage information |
| Num covering plasmid clones | 17 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGATCCCTT CGACACCGGT GGTTTCGCCA CTGCGCCAGC GCTTGCTCGA CGACATGCGC
ATGCGCAAGC TCGGCCCCCA GACGCAATCT GCGTACGTCC GCGCCGTGCG CTACCTCGCG
AGCTTCCTCC AACGCTCCCC CGACACGGCC ACTGCCGAGG ATTTGCGACG CTTCCAGCTG
CACCTGGTCG ACCGGGGCGT CTCGCCGATC ACGCTCAACG CCACCATCAC CGGCCTGAAG
TTCTTCTTCG ACGTCACGCT CCGTCGCGGC GAACTGGTCG AGAGGATGAG CTACGTGCAT
GTGCCGCAGA CGCTGCCGGT GGTGCTCAGC CGCGACGAGG CCGCGCGCCT GATCGCGGCG
GCCACCAACC CCAAGTACCA CACGGCACTG TCCATCGCCT ACGGCACCGG TCTGCGGGTC
AGTGAGATCG TTGCGCTGAA GGTCGGCGAC ATCGACAGCG AGCGCATGAC CCTGCGCGTC
GAGCAGGGCA AGGGTCGCAA GGATCGCTAT GCGATGCTCT CGCCGGTTCT GCTGGAGCGG
CTGCGGGCCT GGTGGCGGTA TGCGAACGCG AAGGGCAAGA TGCTGCCCAA CGGTTGGCTG
TTCCCCGGGC AGAACCCGGT CGATCCCTTG ACCGCGCGCC AGCTCAACCG GGCAGTCCAT
GACGCCGCCG CAGCGGCCAA GATCGATAAG CGCGTCACCA TGCATACGCT GCGCCACAGC
TTCGCCACGC ACCTGCTGGA GCAGAAGGTG GACATCCGCG TGATCCAGGT GATGCTCGGC
CACAAGAAGC TGGAGACCAC GTCGGTCTAC ACGCACGTGG CCACCGAAGT CCTGCGCGAG
GTCGTCAGCC CGCTGGAGAA GCTGTCTGCG TAG
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| Protein sequence | MIPSTPVVSP LRQRLLDDMR MRKLGPQTQS AYVRAVRYLA SFLQRSPDTA TAEDLRRFQL
HLVDRGVSPI TLNATITGLK FFFDVTLRRG ELVERMSYVH VPQTLPVVLS RDEAARLIAA
ATNPKYHTAL SIAYGTGLRV SEIVALKVGD IDSERMTLRV EQGKGRKDRY AMLSPVLLER
LRAWWRYANA KGKMLPNGWL FPGQNPVDPL TARQLNRAVH DAAAAAKIDK RVTMHTLRHS
FATHLLEQKV DIRVIQVMLG HKKLETTSVY THVATEVLRE VVSPLEKLSA
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