| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4495 |
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| Symbol | |
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| ID | 7972784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | + |
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| Start bp | 4743621 |
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| End bp | 4744850 |
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| Gene Length | 1230 bp |
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| Protein Length | 409 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 644795085 |
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| Product | integrase family protein |
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| Protein accession | YP_002946372 |
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| Protein GI | 239817462 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0582] Integrase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.338332 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACTGA CAGACACGTT TGTTAGGCAG GTGAAGCCCA CCGGGAAGGC CAACGGCGAC
AAATATGCCG ACGGCGCCGG CATGTACCTG CTGGTGAAGA CTGCCGGGAA ATACTGGCGA
ATGGATTACA CCTTCGCCGG CAAGCGGAAA ACGCTGGCGC TGGGGACCTA CCCGGAGGTC
TCGCTGGCCA AAGCCCGGGA TCGCCGCGCC GCCGCCCGCG AGCTGCTGGC GGACGGGACC
GACCCGAGCG CGGCCAAGCG CGAAGAAAAG AGAGCCCGAG CCGACGCGGC GGCGAATACG
TTCGAGGCGG TTGCGCGCGA GTGGCTGGGA AAGACCGCGG CCAAACGAGC GAGTGGAACG
CAGCTCAAGG TCAAGACATG GCTCGAGAAG GACGTGTTCC CCTTCATCGG CAAGATGCCC
ATCTCCACCA TCGGTCCGCG CGACATTCTG GAGCGGGTGG TCCGCAAGCT GGAAGCACGC
GGCGCCATCG ATACCGCCCA TCGCGTCAAG CAGCTTTGCG GGCAGGTGTT TCGCTTCGCA
GTGGTGTCAG GACTGGCAGA GAGGGACGTG ACCGCCGATC TGAGCGAAGC TCTGGCCTCG
AAAGCGACCA GGCACTTCGC CGCCATCACC GAGCCCAAGA GAGTCGGCGA CCTGATGCGC
TCGATCCATG CCTACAGCGG CCACCCCACC ACCGTTGCCG CGCTGAAGCT TTCCCCTCTG
CTGTTTGTCC GGCCCGGCGA GTTGCGCACC GCGGAATGGG CCGAGATCGA CCTGGACGCG
GCCGAGTGGC GCATCGCCGG CCCGAAGATG AAAATGAAGG TCGATCATGT CGTGCCGCTC
GCAACCCAGG CGGTGGAGAT CCTGCGCGAC CTCCACCCAA TCACAGGGCA TGGACGGTTT
GTGTTTCCGA GCATACGGAC GGGTGAACGC CCCATGAGCG AGAACACCAT CAATGCCGCC
CTGCGTGGAA TGGGCTACAG CGCCGAAGTC CACACGGCTC ACGGCTTCAG GGCAACCGCG
CGGACCATCA TGGATGAGGT GCTTGGCGAG CGCGTGGACT TCATCGAGCA CCAGCTCTCC
CACATGGTCA GGGATACCAA CGGTCGTGCG TACAACCGCA CTGCGCATCT CCCCGCGCGC
CGGGAAATGA TGCAGCGCTG GGCGGACTAC CTGGACAAGC TGCGCATCGG TGCCGACCTG
ATTCCGTTGA AGCCGCGCCA GATGACATAG
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| Protein sequence | MALTDTFVRQ VKPTGKANGD KYADGAGMYL LVKTAGKYWR MDYTFAGKRK TLALGTYPEV
SLAKARDRRA AARELLADGT DPSAAKREEK RARADAAANT FEAVAREWLG KTAAKRASGT
QLKVKTWLEK DVFPFIGKMP ISTIGPRDIL ERVVRKLEAR GAIDTAHRVK QLCGQVFRFA
VVSGLAERDV TADLSEALAS KATRHFAAIT EPKRVGDLMR SIHAYSGHPT TVAALKLSPL
LFVRPGELRT AEWAEIDLDA AEWRIAGPKM KMKVDHVVPL ATQAVEILRD LHPITGHGRF
VFPSIRTGER PMSENTINAA LRGMGYSAEV HTAHGFRATA RTIMDEVLGE RVDFIEHQLS
HMVRDTNGRA YNRTAHLPAR REMMQRWADY LDKLRIGADL IPLKPRQMT
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