| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4480 |
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| Symbol | |
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| ID | 7972768 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Variovorax paradoxus S110 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_012791 |
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| Strand | - |
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| Start bp | 4729273 |
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| End bp | 4730049 |
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| Gene Length | 777 bp |
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| Protein Length | 258 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 644795069 |
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| Product | 5-carboxymethyl-2-hydroxymuconate Delta-isomerase |
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| Protein accession | YP_002946357 |
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| Protein GI | 239817447 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG0179] 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGCAGCAGC AACAACAACG ATGGGTCCGT TTCGAACACG GCGGCGAAAC GGGCTTCGGC
ACGCTCGAAG GCGATGCCGT GCATGAGCAC CGCGGCAACA TGTTCGATCG CCCGGAGCCG
ACCGGCCGCG TGTTCCTGCT CTCGGGCGTG CGGCTGCTCA CGCCCACCGA GCCGACCAAG
GTCATCGCGC TGTGGAACAA CTTCCACGCG CTCGGCGAGA AGCTCAAGCT CGCGGTGCCG
GCCGAGCCGC TGTACCTGCT GAAGGCGCCC AACTCCTACC TTGCGCCCGG CGCGCCCATC
CGCAAGCCGC TGTGCGAGGG CAAGGTGGTG TTCGAGGGCG AGCTCGGCAT CGTCATCGGC
AAGGCCTGCA CGGCCGTGTC CGAGGCGGAT GCGCTCGGCC ATGTGTTCGG CTACACCTGC
GCCAACGACG TGACGGTGGC CGACATCCTG AACCGCGACG CGTCGTTCGC CCAGTGGGTG
CGGGCCAAGG GCTTCGACAC CTTCTGCCCG ATGGGCCCGG TGGTGGCCAC CGGCCTCGAT
CCCGCCGCGC TCACCGTCAC CACGCTGCTC GATGGTGAGG TGCGGCAGAA CTATCCGATC
AGCGACATGC GCTTTTCGGT CCAGCAACTC GTGAGCCTGA TCTCCCAGGA CATGACCCTG
CAACCCGGTG ACGTGATCCT GTGCGGCACG TCCATCGGCG TCGGCTCGAT GAAGCCCGGC
AGCATGGTCG AAGTGGAGAT CGGCGGCATC GGCAGGCTCG GCAACCGCTT CGGCTGA
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| Protein sequence | MQQQQQRWVR FEHGGETGFG TLEGDAVHEH RGNMFDRPEP TGRVFLLSGV RLLTPTEPTK
VIALWNNFHA LGEKLKLAVP AEPLYLLKAP NSYLAPGAPI RKPLCEGKVV FEGELGIVIG
KACTAVSEAD ALGHVFGYTC ANDVTVADIL NRDASFAQWV RAKGFDTFCP MGPVVATGLD
PAALTVTTLL DGEVRQNYPI SDMRFSVQQL VSLISQDMTL QPGDVILCGT SIGVGSMKPG
SMVEVEIGGI GRLGNRFG
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