| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4479 |
|---|
| Symbol | |
|---|
| ID | 7972767 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4728213 |
|---|
| End bp | 4729226 |
|---|
| Gene Length | 1014 bp |
|---|
| Protein Length | 337 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 644795068 |
|---|
| Product | 2-dehydropantoate 2-reductase |
|---|
| Protein accession | YP_002946356 |
|---|
| Protein GI | 239817446 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1893] Ketopantoate reductase |
|---|
| TIGRFAM ID | [TIGR00745] 2-dehydropantoate 2-reductase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGATAG CAGTCATTGG AGCGGGCGCC ATCGGCGGCT TGGTGGGCGC AAAGCTCGCC
CTGGCCGGCG AGGACGTGAC GTTCATCGTG CGCGGGAAGA ATCTCGACGC CATTGCCACC
AACGGCTTCA AGCTCATCGG AGCCGATGGC ACTGAGCAGG TGGCGCGCAA CGTCAAGGCC
ACCGACCGCT ACGAGCAGGC GGGACCGCAG GACATCGTGA TCCTTGCGAT GAAGGCGCAC
CAGGTCGAGG CGGTGGCGAG CGACGTGCCC AGGCTCTTCG GGCCCGAGAC GGTGGTGGTG
ACGATGCAGA ACGGCATCCC GTTCTGGTAC TTCCACAACC ATGGCGGCGC ACTCGCGGGC
ACGCCGGTGC GCAGCGTCGA CCCGAGCGGC CTGGTGGCCG CGAAGATCCC GGCCGAGCGC
GTCATCGGCT GCGTGGTGTA TCCCGCCTCC GAGCTCACGG CGCCGGGCGT GGTGAAGCAC
ATCGAAGGCG ACCGCTTCCC GGTGGGGGAA CTCGACGGCT CTTCGAGCGA GCGCGTGAAC
CGCGTCTCGG CCTGCCTGGG CGCGGCCGGC TTCAAGGCGC CGGTGCTCGA CAACATCCGC
GCCGAGATAT GGCTCAAGCT CTGGGGCAAC CTGACCTTCA ACCCGATCAG CAGCCTGTCG
CACTCCACGC TGGTCGACAT CTGCCAGTAC CCGCCCTCGC GCGAGCTGGC CGCCGCGATG
ATGCGCGAGG CGCAGGCGGT GGCGCACAAG CTGGGCATCG AGTTCCGCGT GACGCTCGAC
AAGCGCATTG CGGGCGCCGA GAAGGTCGGC AAGCACAAGA CCTCGATGCT GCAGGACGTG
GAGGCCGGCC GCGCACCCGA GATCGATGCG CTGGTGGGCG CCGTGGTCGA GCTGGCCCGG
CTCACCGACA CGCCAACGCC GCACATCGAC ACCGTGTATT CCCTCGTCAA GCTGCTGGCG
CGTACGATGG AAGAACAGCG CGGCCGCGTC TGCCTTCACG AGATGGCGGG CTAG
|
|---|
| Protein sequence | MKIAVIGAGA IGGLVGAKLA LAGEDVTFIV RGKNLDAIAT NGFKLIGADG TEQVARNVKA
TDRYEQAGPQ DIVILAMKAH QVEAVASDVP RLFGPETVVV TMQNGIPFWY FHNHGGALAG
TPVRSVDPSG LVAAKIPAER VIGCVVYPAS ELTAPGVVKH IEGDRFPVGE LDGSSSERVN
RVSACLGAAG FKAPVLDNIR AEIWLKLWGN LTFNPISSLS HSTLVDICQY PPSRELAAAM
MREAQAVAHK LGIEFRVTLD KRIAGAEKVG KHKTSMLQDV EAGRAPEIDA LVGAVVELAR
LTDTPTPHID TVYSLVKLLA RTMEEQRGRV CLHEMAG
|
|---|
| |