| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Vapar_4473 |
|---|
| Symbol | |
|---|
| ID | 7972761 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Variovorax paradoxus S110 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_012791 |
|---|
| Strand | - |
|---|
| Start bp | 4722432 |
|---|
| End bp | 4723298 |
|---|
| Gene Length | 867 bp |
|---|
| Protein Length | 288 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 644795062 |
|---|
| Product | transcriptional regulator, LysR family |
|---|
| Protein accession | YP_002946350 |
|---|
| Protein GI | 239817440 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG0583] Transcriptional regulator |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.240645 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGGACATCA ACCTGGCCCG GACTTTCCTC GAGATCGTGG ACACGCGCAG CTTCCAGCGC
GCCGCCGAGC GGCTGCACGT CACGCAGACT TCGGTGAGCG CGCGCGTGCG AACGCTCGAG
GAGCTGCTGG GCCGGCCGCT CTTCGTGCGC AACAAGGCGG GCGCAGTGCT CACCGCGGCC
GGCGAGCAGT TCCTGCCGCA CGCCACCATG CTGGTGCAGG TGTGGGAGCG CGCGCGCCAC
CAGGTAGCGG TGCCCGTCGG CAGCCGCGCG GTGCTTGCCA TCGGATGCGA GATCAGCCTG
TGGGATCCGC TGCTGCTGCA ATGGCTGCTG TGGATGCGCA CCGCCGCGCC GCAGCTGGCC
ATCCGCACCG AGGTCGGCTT TCCGCACGAC CTGCTCGACA AGGTGGCCGC GGGCGTGCTC
GACATGGCCA TTGCCTACGC GCCGCAGCAG CGGCCCGGCC TGCGCGTGGA GCTGCTCATC
GAGGAGAAGC TGGTCATGGT CACGACCGCG CAGCATCCGC GCGTGCCGCG GCCCGCGGAC
TACGTGTATG TGGACTGGGG CCCGGAGTTC GCGGCGCAGC ACGGCCTCGC GTTTCCCGAG
CTCTCCAACG CCGCGGTGAG CGCGGGGCTC GGGCCGCTCG GGCGCGAGTA TCTGCTGGCC
GCGGGCGGCA CCGGCTACTT CCGGCACGAC GTGGTGCGCA GCCACCTCGA GTCGGGCCGG
CTGCGCCGCG TGCCCGGCAC GCCGGAGTTT CTTTATCCGG CCTATGCGGT GTATGCGGTG
GGAGCGGACG CGGCCATCGT CGATCCCGCG CTTGCGGGCC TCAGGCAGGT GGTCAAGGCG
AAGCCGGAGG TCCAGGCGGA GGCCTAG
|
|---|
| Protein sequence | MDINLARTFL EIVDTRSFQR AAERLHVTQT SVSARVRTLE ELLGRPLFVR NKAGAVLTAA
GEQFLPHATM LVQVWERARH QVAVPVGSRA VLAIGCEISL WDPLLLQWLL WMRTAAPQLA
IRTEVGFPHD LLDKVAAGVL DMAIAYAPQQ RPGLRVELLI EEKLVMVTTA QHPRVPRPAD
YVYVDWGPEF AAQHGLAFPE LSNAAVSAGL GPLGREYLLA AGGTGYFRHD VVRSHLESGR
LRRVPGTPEF LYPAYAVYAV GADAAIVDPA LAGLRQVVKA KPEVQAEA
|
|---|
| |